Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1378c_(-)_1551234_1552661
DateWed Jul 31 22:05:48 BST 2019
Unique Job ID1a55f11cccc9afe8
SequenceMGNLDLLLRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.784 Y:30.022 Z:32.718
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 98.6% Coverage: 13%
63 residues ( 13% of your sequence) have been modelled with 98.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



98.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c5mkwA_



98.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
3c6ghcA_



98.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
4c5vgbA_



97.4 21
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
5c5h0mA_



97.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
6c5x1hS_



97.3 17
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
7c5zmmD_



97.0 27
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
8c4ogeA_



96.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



94.9 15
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10d1vz0a1



84.4 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
11c6ghsA_



80.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
12c4cmqB_



76.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
13c6et6A_



59.7 20
PDB header:antimicrobial protein
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of muramidase from acinetobacter baumannii ab 5075uw2 prophage
14c1r71B_



49.8 16
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
15d1ejga_



48.2 25
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
16d1jmna_



46.7 17
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
17d2dlka1



46.5 30
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
18d1r71a_



44.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
19c2qnfB_



42.0 22
PDB header:hydrolase/dna
Chain: B: PDB Molecule:recombination endonuclease vii;
PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches
20d1okha_



37.4 25
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
21d1nbla_



not modelled 36.7 25
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
22d1jmpa_



not modelled 34.5 17
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
23d1orla_



not modelled 34.1 17
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
24c3mkzU_



not modelled 34.0 20
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
25d1bhia_



not modelled 32.8 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
26d1a1ga1



not modelled 31.4 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
27d1ncsa_



not modelled 31.2 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
28c6dhrA_



not modelled 30.4 31
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
29d1zfda_



not modelled 29.5 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
30d1u86a1



not modelled 28.9 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
31d1e7la2



not modelled 28.4 22
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Recombination endonuclease VII, N-terminal domain
32d2glia4



not modelled 27.8 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33d1a1ia1



not modelled 27.8 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
34c3mkyP_



not modelled 27.5 22
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
35c1orxA_



not modelled 27.5 33
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
36c1pxeA_



not modelled 27.1 45
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
37d2r4qa1



not modelled 26.0 43
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
38c1jjzA_



not modelled 25.5 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
39c1k48A_



not modelled 25.1 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
40c1va1A_



not modelled 25.1 20
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
41c3cwbQ_



not modelled 24.4 33
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
42c2f2iA_



not modelled 24.1 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
43d1n1ua_



not modelled 24.0 22
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
44c1n1uA_



not modelled 24.0 22
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
45d1pt4a_



not modelled 23.9 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
46c4ttnA_



not modelled 23.8 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
47d1a1ha1



not modelled 23.8 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
48c2khbA_



not modelled 23.6 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
49c2mn1A_



not modelled 23.6 33
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
50c4ttoA_



not modelled 23.6 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
51c4ttmA_



not modelled 23.5 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
52c1kalA_



not modelled 22.8 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
53d2jb0b1



not modelled 22.8 19
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
54d1aaya1



not modelled 22.1 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
55d1f2ig1



not modelled 21.6 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
56d1nb1a_



not modelled 21.5 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
57c1nb1A_



not modelled 21.5 33
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
58d2gykb1



not modelled 21.4 15
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
59d1w6ga1



not modelled 21.4 23
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
60c2f2jA_



not modelled 21.1 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
61c2ak0A_



not modelled 21.0 33
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin mii;
PDBTitle: structure of cyclic conotoxin mii-7
62c2kukA_



not modelled 20.6 22
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
63d2glia5



not modelled 20.5 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
64c2jydA_



not modelled 20.3 50
PDB header:metal binding protein
Chain: A: PDB Molecule:f5 domain of myelin transcription factor 1;
PDBTitle: structure of the fifth zinc finger of myelin transcription2 factor 1
65c2lurA_



not modelled 20.2 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
66d1tf3a2



not modelled 19.8 19
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
67c3e4hA_



not modelled 19.7 22
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
68c2lamA_



not modelled 19.1 33
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
69c4clvB_



not modelled 19.1 21
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
70c2ajwA_



not modelled 18.8 40
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin mii;
PDBTitle: structure of the cyclic conotoxin mii-6
71d1sp2a_



not modelled 18.6 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
72d1ubdc4



not modelled 18.3 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
73c2yiuE_



not modelled 18.2 16
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
74c2gj0A_



not modelled 17.8 33
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
75d2glia3



not modelled 17.2 13
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
76d2dlka2



not modelled 17.2 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
77d1ubdc3



not modelled 17.2 13
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
78c2k7gA_



not modelled 17.0 22
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f
79c3goxB_



not modelled 17.0 19
PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease hpy99i;
PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
80c2b8tA_



not modelled 16.9 12
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
81d2b8ta2



not modelled 16.8 21
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
82c5yixB_



not modelled 16.1 29
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
83c2m9oA_



not modelled 16.0 22
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
84c4i1lA_



not modelled 15.8 17
PDB header:transcription regulator
Chain: A: PDB Molecule:forkhead box protein p3;
PDBTitle: structural and biological features of foxp3 dimerization relevant to2 regulatory t cell function
85d1rbli_



not modelled 15.3 29
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
86d2ysca1



not modelled 15.0 41
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
87c5xe7A_



not modelled 14.6 28
PDB header:dna binding protein
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigj;
PDBTitle: crystal structure of mycobacterium tuberculosis extracytoplasmic2 function sigma factor sigj
88c5g2xC_



not modelled 13.2 26
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
89c1zw8A_



not modelled 13.0 16
PDB header:transcription
Chain: A: PDB Molecule:zinc-responsive transcriptional regulator zap1;
PDBTitle: solution structure of a zap1 zinc-responsive domain2 provides insights into metalloregulatory transcriptional3 repression in saccharomyces cerevisiae
90d1ig4a_



not modelled 12.4 24
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
91c4kt5C_



not modelled 12.2 14
PDB header:transcription regulator
Chain: C: PDB Molecule:grla;
PDBTitle: structure of grlr-grla complex
92c4v30A_



not modelled 12.0 23
PDB header:signaling protein
Chain: A: PDB Molecule:cereblon isoform 4;
PDBTitle: cereblon isoform 4 from magnetospirillum gryphiswaldense in2 complex with lenalidomide
93c2anxB_



not modelled 12.0 15
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme;
PDBTitle: crystal structure of bacteriophage p22 lysozyme mutant l87m
94d1mswd_



not modelled 12.0 33
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:T7 RNA polymerase
95c3hslX_



not modelled 11.9 30
PDB header:replication
Chain: X: PDB Molecule:orf59;
PDBTitle: the crystal structure of pf-8, the dna polymerase accessory subunit2 from kaposi's sarcoma-associated herpesvirus
96c1vz0B_



not modelled 11.8 26
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome-partitioning protein spo0j;
PDBTitle: chromosome segregation protein spo0j from thermus thermophilus
97c2pncB_



not modelled 11.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
98c2jwmA_



not modelled 11.5 22
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle
99d1w94a1



not modelled 11.5 14
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Brix domain

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