Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1382_(-)_1555483_1555980
DateWed Jul 31 22:05:48 BST 2019
Unique Job ID2aa613a7123708c7
SequenceMNSGTLAGSL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.723 Y:46.928 Z:24.860
Model (left) based on template d2oara1
Top template information
Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
Confidence and coverage
Confidence: 48.4% Coverage: 24%
40 residues ( 24% of your sequence) have been modelled with 48.4% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2oara1



48.4 18
Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
2c2oarA_



31.2 18
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
3c6adqP_



26.2 46
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
4c2micB_



22.9 31
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
5c2micA_



22.9 31
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
6c4cdiC_



22.6 28
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: crystal structure of acrb-acrz complex
7c2grxB_



18.7 16
PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
8c3ts3D_



17.8 30
PDB header:viral protein
Chain: D: PDB Molecule:capsid polyprotein;
PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution
9c2lowA_



15.8 16
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
10c2lp1A_



15.1 19
PDB header:membrane protein
Chain: A: PDB Molecule:c99;
PDBTitle: the solution nmr structure of the transmembrane c-terminal domain of2 the amyloid precursor protein (c99)
11c3hzqA_



14.8 13
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of a tetrameric mscl in an expanded intermediate state
12c2xfvB_



14.2 33
PDB header:cell-cycle
Chain: B: PDB Molecule:regulatory protein swi6;
PDBTitle: structure of the amino-terminal domain from the cell-cycle2 regulator swi6
13d1eyqa_



14.2 20
Fold:Chalcone isomerase
Superfamily:Chalcone isomerase
Family:Chalcone isomerase
14c3t2dA_



13.4 12
PDB header:lyase, hydrolase
Chain: A: PDB Molecule:fructose-1,6-bisphosphate aldolase/phosphatase;
PDBTitle: fructose-1,6-bisphosphate aldolase/phosphatase from thermoproteus2 neutrophilus, fbp-bound form
15c4doiB_



13.1 20
PDB header:isomerase
Chain: B: PDB Molecule:chalcone--flavonone isomerase 1;
PDBTitle: crystal structure of arabidopsis thaliana chalcone isomerase at3g551202 (atchi)
16c5yx4A_



12.7 15
PDB header:isomerase
Chain: A: PDB Molecule:chalcone-flavonone isomerase family protein;
PDBTitle: isoliquiritigenin-complexed chalcone isomerase (s189a) from the2 antarctic vascular plant deschampsia antarctica (dachi1)
17c4dokA_



12.4 10
PDB header:isomerase
Chain: A: PDB Molecule:similarity to chalcone-flavonone isomerase;
PDBTitle: crystal structure of arabidopsis thaliana chalcone-isomerase like2 protein at5g05270 (atchil)
18d2ix0a3



11.7 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
19d1a62a2



11.3 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
20d2ix0a2



10.9 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
21d1qb5d_



not modelled 10.7 36
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
22c5wl4D_



not modelled 10.3 20
PDB header:isomerase
Chain: D: PDB Molecule:engineered chalcone isomerase ancr3;
PDBTitle: crystal structure of chalcone isomerase engineered from ancestral2 inference (ancr3)
23d1ea0a3



not modelled 10.0 21
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
24d1f7ra_



not modelled 9.2 18
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
25c3mk7F_



not modelled 9.0 8
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
26c3ixzB_



not modelled 8.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
27c3d0fA_



not modelled 8.7 16
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
28c2lioA_



not modelled 8.3 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of bfr322 from bacteroides fragilis, northeast2 structural genomics consortium target bfr322
29d1by5a_



not modelled 8.2 16
Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
30c1n62E_



not modelled 8.0 8
PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
31c4dooA_



not modelled 7.8 25
PDB header:isomerase
Chain: A: PDB Molecule:chalcone-flavanone isomerase family protein;
PDBTitle: crystal structure of arabidopsis thaliana fatty-acid binding protein2 at3g63170 (atfap1)
32d2pila_



not modelled 7.6 16
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
33d2gcla1



not modelled 7.4 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:SSRP1-like
34d1f7da_



not modelled 7.4 16
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
35c2mkaA_



not modelled 7.3 26
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the toll-like receptor 3 transmembrane domain in2 the trimeric state
36c2mk9A_



not modelled 7.3 26
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the dimeric transmembrane domain of toll-like2 receptor 3
37c2mkaC_



not modelled 7.3 26
PDB header:immune system
Chain: C: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the toll-like receptor 3 transmembrane domain in2 the trimeric state
38c2mk9B_



not modelled 7.3 26
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the dimeric transmembrane domain of toll-like2 receptor 3
39c2mkaB_



not modelled 7.3 26
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the toll-like receptor 3 transmembrane domain in2 the trimeric state
40d1oqwa_



not modelled 7.1 22
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
41c3ssmB_



not modelled 6.9 36
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 1
42d1duna_



not modelled 6.8 15
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
43c2l6wA_



not modelled 6.5 29
PDB header:membrane protein
Chain: A: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
44c2l6wB_



not modelled 6.5 29
PDB header:membrane protein
Chain: B: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
45c2rddB_



not modelled 6.4 17
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
46d1mrza1



not modelled 6.4 23
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:ATP-dependent riboflavin kinase-like
47c2mkvA_



not modelled 6.3 18
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
48c3wmmP_



not modelled 6.3 25
PDB header:photosynthesis
Chain: P: PDB Molecule:lh1 beta polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
49c4dolA_



not modelled 6.1 30
PDB header:isomerase
Chain: A: PDB Molecule:at1g53520;
PDBTitle: crystal structure of arabidopsis thaliana fatty-acid binding protein2 at1g53520 (atfap3)
50d1ofda3



not modelled 6.1 25
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
51c2e12B_



not modelled 6.0 29
PDB header:translation
Chain: B: PDB Molecule:hypothetical protein xcc3642;
PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif
52c2vdcF_



not modelled 5.8 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
53c5h7yB_



not modelled 5.7 33
PDB header:hydrolase inhibitor/peptide
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of immunity protein tplei of t6ss from pseudomonas2 aeruginosa complexed with "l" peptide
54c1wa7B_



not modelled 5.7 25
PDB header:sh3 domain
Chain: B: PDB Molecule:hypothetical 28.7 kda protein in dhfr 3'region
PDBTitle: sh3 domain of human lyn tyrosine kinase in complex with a2 herpesviral ligand
55c6fkip_



not modelled 5.5 7
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
56d2pwaa1



not modelled 5.5 36
Fold:Subtilisin-like
Superfamily:Subtilisin-like
Family:Subtilases
57c5wdaL_



not modelled 5.5 20
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus

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Transmembrane helix prediction 

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