Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1388_(mihF)_1563700_1564272
DateWed Jul 31 22:05:49 BST 2019
Unique Job ID5870fc51a757caf2
SequenceLLGNTIHVPC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.108 Y:29.981 Z:43.877
Model (left) based on template c4itqA_
Top template information
PDB header:gene regulation, structural protein/dna
Chain: A: PDB Molecule:putative uncharacterized protein sco1480;
PDBTitle: crystal structure of hypothetical protein sco1480 bound to dna
Confidence and coverage
Confidence:100.0% Coverage: 47%
90 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
162 residues ( 85%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4itqA_
100.0 57
PDB header:gene regulation, structural protein/dna
Chain: A: PDB Molecule:putative uncharacterized protein sco1480;
PDBTitle: crystal structure of hypothetical protein sco1480 bound to dna
2d1i94m_
96.3 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
3d2uubm1
96.3 26
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
4c3iz6M_
96.2 16
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
5c2xznM_
96.2 20
PDB header:ribosome
Chain: M: PDB Molecule:rps18e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
6d2gy9m1
96.2 21
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
7c5o5jM_
96.2 21
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
8c2zkqm_
96.0 18
PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
9c3j20O_
96.0 21
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
10c5xyiS_
95.3 14
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s13p/s18e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
11c5mmjm_
94.5 15
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
12c3zeyM_
94.5 18
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
13c3twkB_
94.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg
14d2hkja1
94.2 21
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Topoisomerase VI-B subunit middle domain
15d1r2za1
93.8 19
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
16c2f5qA_
93.8 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
17d1tdza1
93.2 15
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
18d1ee8a1
93.2 21
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
19d1k82a1
93.1 23
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
20c1k82D_
93.0 23
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
21c1ee8A_
not modelled 92.9 21
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
22c3fhgA_
not modelled 92.3 11
PDB header:dna repair, hydrolase, lyase
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg)
23c3w0fA_
not modelled 91.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
24c1nnjA_
not modelled 91.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
25d2aq0a1
not modelled 90.5 17
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
26c1s5lu_
not modelled 90.1 19
PDB header:photosynthesis
Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
27c3a46B_
not modelled 88.1 24
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of mvnei1/thf complex
28d1x2ia1
not modelled 87.9 20
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
29c3n0uB_
not modelled 87.2 16
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:probable n-glycosylase/dna lyase;
PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima
30d2axtu1
not modelled 87.0 19
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:PsbU-like
31d1cuka2
not modelled 86.6 22
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
32c2opfA_
not modelled 86.0 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
33d1k3xa1
not modelled 85.9 21
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
34c3s6iA_
not modelled 84.1 9
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1;
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
35c1ixrA_
not modelled 84.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
36d1kfta_
not modelled 83.9 14
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
37c1kftA_
not modelled 83.9 14
PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
38d2bgwa1
not modelled 82.5 20
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
39c4b24A_
not modelled 81.6 7
PDB header:hydrolase/dna
Chain: A: PDB Molecule:probable dna-3-methyladenine glycosylase 2;
PDBTitle: unprecedented sculpting of dna at abasic sites by dna glycoslase2 homolog mag2
40c2bhnD_
not modelled 81.5 19
PDB header:hydrolase
Chain: D: PDB Molecule:xpf endonuclease;
PDBTitle: xpf from aeropyrum pernix
41c4bxoA_
not modelled 81.1 4
PDB header:hydrolase/dna
Chain: A: PDB Molecule:fanconi anemia group m protein;
PDBTitle: architecture and dna recognition elements of the fanconi anemia fancm-2 faap24 complex
42c4mb7A_
not modelled 80.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like l720;
PDBTitle: crystal structure of a viral dna glycosylase
43d2duya1
not modelled 80.1 24
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:ComEA-like
44d1ixra1
not modelled 79.6 24
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
45d2a1jb1
not modelled 79.0 23
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
46d1bvsa2
not modelled 78.3 26
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
47c2ihmA_
not modelled 77.6 13
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
48d2edua1
not modelled 77.4 27
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:ComEA-like
49d1dgsa1
not modelled 77.3 25
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
50c8iczA_
not modelled 76.1 14
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7));
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
51c2lyhA_
not modelled 75.9 29
PDB header:dna binding protein
Chain: A: PDB Molecule:fanconi anemia-associated protein of 24 kda;
PDBTitle: structure of faap24 residues 141-215
52c2h5xA_
not modelled 75.4 26
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
53c4p4oA_
not modelled 74.7 21
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
54c3mr2A_
not modelled 74.6 18
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm)
55c4bxoB_
not modelled 73.6 29
PDB header:hydrolase/dna
Chain: B: PDB Molecule:fanconi anemia-associated protein of 24 kda;
PDBTitle: architecture and dna recognition elements of the fanconi anemia fancm-2 faap24 complex
56c1d8lA_
not modelled 73.0 22
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
57c6erpJ_
not modelled 72.8 13
PDB header:transcription
Chain: J: PDB Molecule:dimethyladenosine transferase 2, mitochondrial;
PDBTitle: structure of the human mitochondrial transcription initiation complex2 at the lsp promoter
58c2mutA_
not modelled 72.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-1;
PDBTitle: solution structure of the f231l mutant ercc1-xpf dimerization region
59c2yg8B_
not modelled 72.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (alka) from2 deinococcus radiodurans
60c3f10A_
not modelled 72.0 28
PDB header:hydrolase, lyase
Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase;
PDBTitle: crystal structure of clostridium acetobutylicum 8-oxoguanine dna2 glycosylase in complex with 8-oxoguanosine
61c1hjpA_
not modelled 70.3 22
PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
62d1szpa1
not modelled 67.3 20
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
63d1t94a2
not modelled 66.4 26
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
64d2a1ja1
not modelled 66.3 17
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
65c3auoB_
not modelled 66.1 20
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
66c1kdhA_
not modelled 65.1 14
PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
67c3epvB_
not modelled 64.3 16
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr;
PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms
68c1mpgB_
not modelled 63.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii;
PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli
69c2zj8A_
not modelled 62.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative ski2-type helicase;
PDBTitle: archaeal dna helicase hjm apo state in form 2
70d1ul1x1
not modelled 62.6 19
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
71c3n5nX_
not modelled 62.6 35
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
72d1rxwa1
not modelled 62.1 19
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
73c1ixrB_
not modelled 61.8 26
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
74d1a77a1
not modelled 60.9 18
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
75c2nrzB_
not modelled 59.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the c-terminal half of uvrc bound to its2 catalytic divalent cation
76c2bcuA_
not modelled 59.1 16
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
77c1mx0D_
not modelled 58.5 21
PDB header:isomerase
Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b;
PDBTitle: structure of topoisomerase subunit
78c2csdB_
not modelled 56.4 15
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
79d2p6ra2
not modelled 55.6 16
Fold:Sec63 N-terminal domain-like
Superfamily:Sec63 N-terminal domain-like
Family:Achaeal helicase C-terminal domain
80d1szpb1
not modelled 54.8 21
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
81c4l8iA_
not modelled 54.2 14
PDB header:immune system
Chain: A: PDB Molecule:rsv epitope scaffold ffl_005;
PDBTitle: crystal structure of rsv epitope scaffold ffl_005
82c3bbnM_
not modelled 54.0 17
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
83d3bzka1
not modelled 53.9 30
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
84c1rrqA_
not modelled 53.9 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
85c5ol9A_
not modelled 53.9 9
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor, mitochondrial;
PDBTitle: structure of human mitochondrial transcription elongation factor2 (tefm) n-terminal domain
86c4clvB_
not modelled 53.6 14
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
87c4unfA_
not modelled 53.0 25
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
88d1mpga1
not modelled 52.9 19
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
89d1xo1a1
not modelled 51.3 18
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
90c4ejyA_
not modelled 51.2 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:3-methyladenine dna glycosylase;
PDBTitle: structure of mbogg1 in complex with high affinity dna ligand
91d1b43a1
not modelled 50.5 29
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
92c1b22A_
not modelled 50.1 20
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: rad51 (n-terminal domain)
93d1b22a_
not modelled 50.1 20
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
94d1mc8a1
not modelled 49.9 29
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
95d1kg2a_
not modelled 49.9 39
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
96c4uobA_
not modelled 49.3 30
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
97d1pu6a_
not modelled 48.6 28
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase III (MagIII)
98c2ziuA_
not modelled 47.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:mus81 protein;
PDBTitle: crystal structure of the mus81-eme1 complex
99c2i5hA_
not modelled 47.7 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1531;
PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655
100d2i5ha1
not modelled 47.7 50
Fold:AF1531-like
Superfamily:AF1531-like
Family:AF1531-like
101d2i1qa1
not modelled 47.5 9
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
102d1pzna1
not modelled 47.5 14
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
103c1yqmA_
not modelled 47.4 28
PDB header:hydrolase/dna
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna
104c2jrtA_
not modelled 47.4 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5
105d1keaa_
not modelled 46.0 33
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
106d1rrqa1
not modelled 45.9 17
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
107c3kntC_
not modelled 45.9 17
PDB header:hydrolase, lyase/dna
Chain: C: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of methanocaldococcus jannaschii 8-oxoguanine2 glycosylase/lyase in complex with 15mer dna containing 8-oxoguanine
108d1orna_
not modelled 45.4 33
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
109d2abka_
not modelled 45.3 50
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
110c2jhnB_
not modelled 44.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna-glycosylase;
PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
111c1t3nB_
not modelled 44.6 26
PDB header:replication/dna
Chain: B: PDB Molecule:polymerase (dna directed) iota;
PDBTitle: structure of the catalytic core of dna polymerase iota in complex with2 dna and dttp
112c2oh2B_
not modelled 43.8 26
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase kappa;
PDBTitle: ternary complex of human dna polymerase
113c2owoA_
not modelled 43.7 32
PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
114d2vana1
not modelled 41.8 18
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
115c5ituB_
not modelled 41.1 26
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:endonuclease 8-like 1;
PDBTitle: crystal structure of human neil1(242k) bound to duplex dna containing2 thf
116d1jx4a2
not modelled 41.0 21
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
117d1tdha1
not modelled 40.6 23
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
118d1eh1a_
not modelled 38.8 39
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
119d2oa4a1
not modelled 37.9 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:SPO1678-like
120c1ut8B_
not modelled 37.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite