Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1392_(metK)_1566831_1568042
DateWed Jul 31 22:05:49 BST 2019
Unique Job IDed7a20f0620bd8ff
SequenceVSEKGRLFTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:68.759 Y:58.997 Z:54.318
Model (left) based on template c5h9uC_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a thermostable methionine adenosyltransferase
Confidence and coverage
Confidence:100.0% Coverage: 97%
390 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5h9uC_



100.0 59
PDB header:transferase
Chain: C: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a thermostable methionine adenosyltransferase
2c1rg9D_



100.0 61
PDB header:transferase
Chain: D: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp
3c3rv2B_



100.0 95
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum
4c2obvA_



100.0 55
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1;
PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product
5c4odjA_



100.0 51
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a putative s-adenosylmethionine synthetase from2 cryptosporidium hominis in complex with s-adenosyl-methionine
6c3so4C_



100.0 52
PDB header:transferase
Chain: C: PDB Molecule:methionine-adenosyltransferase;
PDBTitle: methionine-adenosyltransferase from entamoeba histolytica
7c3imlB_



100.0 60
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
8c4le5A_



100.0 43
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: structure of an unusual s-adenosylmethionine synthetase from2 campylobacter jejuni
9d1mxaa3



100.0 67
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
10d1qm4a3



100.0 62
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
11d2p02a3



100.0 61
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
12d1mxaa2



100.0 50
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
13d2p02a2



100.0 45
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
14d1qm4a2



100.0 49
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
15d2p02a1



100.0 56
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
16d1mxaa1



100.0 60
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
17d1qm4a1



100.0 56
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
18c4hpvA_



99.0 23
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from sulfolobus2 solfataricus
19c4l4qA_



99.0 19
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: methionine adenosyltransferase
20c2mblA_



52.2 21
PDB header:de novo protein
Chain: A: PDB Molecule:top7 fold protein top7m13;
PDBTitle: solution nmr structure of de novo designed top7 fold protein top7m13,2 northeast structural genomics consortium (nesg) target or33
21d1w9ha1



not modelled 52.0 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:PIWI domain
22c4idxA_



not modelled 44.5 43
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: hexameric crystal structure of schmallenberg virus nucleoprotein
23d1u04a2



not modelled 39.8 22
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:PIWI domain
24c3ho1A_



not modelled 38.6 25
PDB header:nucleic acid binding protein/dna/rna
Chain: A: PDB Molecule:argonaute;
PDBTitle: crystal structure of t. thermophilus argonaute n546 mutant protein2 complexed with dna guide strand and 12-nt rna target strand
25c5guhA_



not modelled 37.6 18
PDB header:hydrolase/rna
Chain: A: PDB Molecule:piwi;
PDBTitle: crystal structure of silkworm piwi-clade argonaute siwi bound to pirna
26c4ijsB_



not modelled 37.4 38
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of nucleocapsid protein encoded by the prototypic2 member of orthobunyavirus
27d1twfc1



not modelled 36.6 21
Fold:DCoH-like
Superfamily:RBP11-like subunits of RNA polymerase
Family:RNA polymerase alpha subunit dimerisation domain
28c4bhhZ_



not modelled 36.6 48
PDB header:viral protein/rna
Chain: Z: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of tetramer of la crosse virus nucleoprotein in2 complex with ssrna
29d1kjna_



not modelled 34.3 29
Fold:Hypothetical protein MTH777 (MT0777)
Superfamily:Hypothetical protein MTH777 (MT0777)
Family:Hypothetical protein MTH777 (MT0777)
30c2z51A_



not modelled 34.0 35
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 2, chloroplast;
PDBTitle: crystal structure of arabidopsis cnfu involved in iron-sulfur cluster2 biosynthesis
31c2w42A_



not modelled 33.7 16
PDB header:protein/dna complex
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the structure of a piwi protein from archaeoglobus fulgidus2 complexed with a 16nt dna duplex.
32c2w8iG_



not modelled 31.4 28
PDB header:membrane protein
Chain: G: PDB Molecule:putative outer membrane lipoprotein wza;
PDBTitle: crystal structure of wza24-345.
33c3lvtA_



not modelled 31.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase, family 38;
PDBTitle: the crystal structure of a protein in the glycosyl hydrolase family 382 from enterococcus faecalis to 2.55a
34c4j1jA_



not modelled 29.5 33
PDB header:viral protein/dna
Chain: A: PDB Molecule:nucleocapsid;
PDBTitle: leanyer orthobunyavirus nucleoprotein-ssdna complex
35c2mraA_



not modelled 29.2 23
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or459;
PDBTitle: solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or459
36c2gjhA_



not modelled 24.5 21
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
37d1to0a_



not modelled 24.5 50
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
38c3k8zD_



not modelled 23.9 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis
39d1vh0a_



not modelled 23.6 63
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
40c2inrA_



not modelled 23.2 25
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus
41d2fm8a1



not modelled 23.2 28
Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
42d1ns5a_



not modelled 22.6 40
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
43c3kxyV_



not modelled 22.3 54
PDB header:chaperone/transcription inhibitor
Chain: V: PDB Molecule:exse;
PDBTitle: crystal structure of the exsc-exse complex
44d1o6da_



not modelled 22.1 50
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
45d2nrqa1



not modelled 21.9 28
Fold:RL5-like
Superfamily:RL5-like
Family:SSO1042-like
46d1vkha_



not modelled 21.3 19
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Putative serine hydrolase Ydr428c
47c2vofA_



not modelled 20.6 4
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
48c5lqwL_



not modelled 20.4 43
PDB header:splicing
Chain: L: PDB Molecule:pre-mrna-splicing factor cwc26;
PDBTitle: yeast activated spliceosome
49c2jvfA_



not modelled 19.9 9
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
50d1mp9a1



not modelled 19.7 20
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
51c4v19T_



not modelled 19.6 22
PDB header:ribosome
Chain: T: PDB Molecule:mitoribosomal protein bl19m, mrpl19;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
52c5i4aC_



not modelled 18.8 18
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:argonaute protein;
PDBTitle: x-ray crystal structure of marinitoga piezophila argonaute in complex2 with 5' oh guide rna
53c2mcdA_



not modelled 18.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:murine norovirus 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus ns1/2 d94e mutant
54c4e0iA_



not modelled 18.0 69
PDB header:oxidoreductase
Chain: A: PDB Molecule:mitochondrial fad-linked sulfhydryl oxidase erv1;
PDBTitle: crystal structure of the c30s/c133s mutant of erv1 from saccharomyces2 cerevisiae
55c5zyoD_



not modelled 18.0 50
PDB header:transferase
Chain: D: PDB Molecule:ribosomal rna large subunit methyltransferase h;
PDBTitle: crystal structure of domain-swapped circular-permuted ybea (cp74) from2 escherichia coli
56d1azpa_



not modelled 17.9 40
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
57d2fiqa1



not modelled 17.8 32
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:GatZ-like
58c5vogA_



not modelled 17.4 19
PDB header:transferase
Chain: A: PDB Molecule:putative phosphoribosyltransferase;
PDBTitle: crystal structure of a hypothetical protein from neisseria gonorrhoeae2 with bound ppgpp
59d1aisa2



not modelled 17.4 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
60c1u04A_



not modelled 17.4 31
PDB header:hydrolase/gene regulation
Chain: A: PDB Molecule:hypothetical protein pf0537;
PDBTitle: crystal structure of full length argonaute from pyrococcus furiosus
61c5awhA_



not modelled 17.2 21
PDB header:rna binding protein/dna/rna
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: rhodobacter sphaeroides argonaute in complex with guide rna/target dna2 heteroduplex
62c3d4oA_



not modelled 16.6 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase subunit a;
PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution
63c2z8uQ_



not modelled 16.4 27
PDB header:transcription
Chain: Q: PDB Molecule:tata-box-binding protein;
PDBTitle: methanococcus jannaschii tbp
64c2jkzB_



not modelled 15.3 40
PDB header:transferase
Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'-3 monophosphate) (orthorhombic crystal form)
65d1q33a_



not modelled 15.2 60
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
66c5theA_



not modelled 15.2 24
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the c-terminal lobe of a budding yeast argonaute
67c5vidG_



not modelled 15.0 18
PDB header:toxin
Chain: G: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
68c5vidI_



not modelled 15.0 18
PDB header:toxin
Chain: I: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
69c3aoeC_



not modelled 15.0 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form)
70c5g5tA_



not modelled 14.8 33
PDB header:hydrolase/dna
Chain: A: PDB Molecule:argonaute;
PDBTitle: structure of the argonaute protein from methanocaldcoccus janaschii in2 complex with guide dna
71c2mckA_



not modelled 14.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus cr6 ns1/2 protein
72d2bgxa2



not modelled 14.5 21
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
73c5ijzH_



not modelled 14.4 24
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadp-specific glutamate dehydrogenase;
PDBTitle: crystal strcuture of glutamate dehydrogenase(gdh) from corynebacterium2 glutamicum
74c3aogA_



not modelled 14.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form)
75d1csna_



not modelled 14.0 15
Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Protein kinases, catalytic subunit
76c6qzkA_



not modelled 14.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:clostridium butyricum argonaute;
PDBTitle: structure of clostridium butyricum argonaute bound to a guide dna (5'2 deoxycytidine) and a 19-mer target dna
77d2f9wa2



not modelled 13.6 43
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like
78d1t0ga_



not modelled 13.4 39
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
79c4m6iA_



not modelled 13.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan amidase rv3717;
PDBTitle: structure of the reduced, zn-bound form of mycobacterium tuberculosis2 peptidoglycan amidase rv3717
80c1qysA_



not modelled 13.2 29
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
81c2j58G_



not modelled 13.2 27
PDB header:membrane protein
Chain: G: PDB Molecule:outer membrane lipoprotein wza;
PDBTitle: the structure of wza
82d1knga_



not modelled 13.2 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
83c1v57A_



not modelled 12.9 25
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
84d1nh2a2



not modelled 12.8 20
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
85c5b3kA_



not modelled 12.7 19
PDB header:electron transport
Chain: A: PDB Molecule:uncharacterized protein pa3435;
PDBTitle: c101a mutant of flavodoxin from pseudomonas aeruginosa
86c2bmaA_



not modelled 12.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+);
PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs
87c5b54D_



not modelled 12.2 28
PDB header:transferase
Chain: D: PDB Molecule:cysteine synthase;
PDBTitle: crystal structure of hydrogen sulfide-producing enzyme (fn1055) from2 fusobacterium nucleatum: lysine-dimethylated form
88d1yvua2



not modelled 12.1 6
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:PIWI domain
89c1wnkA_



not modelled 12.0 43
PDB header:transcription
Chain: A: PDB Molecule:fibroin-modulator-binding-protein-1;
PDBTitle: nmr structure of fmbp-1 tandem repeat 3 in 30%(v/v) tfe2 solution
90c5ylyB_



not modelled 11.9 6
PDB header:flavoprotein
Chain: B: PDB Molecule:nitrate reductase;
PDBTitle: crystal structure of the cytochrome b5 reductase domain of ulva2 prolifera nitrate reductase
91c2wl2B_



not modelled 11.8 22
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
92c6qt9Y_



not modelled 11.8 37
PDB header:virus
Chain: Y: PDB Molecule:orf 31;
PDBTitle: cryo-em structure of sh1 full particle.
93d1aisa1



not modelled 11.8 29
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
94c4ediC_



not modelled 11.7 17
PDB header:transport protein
Chain: C: PDB Molecule:ethanolamine utilization protein;
PDBTitle: disulfide bonded eutl from clostridium perfringens
95c2hnbA_



not modelled 11.6 15
PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
96d1mtyd_



not modelled 11.3 59
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
97c3u27D_



not modelled 11.3 34
PDB header:structural protein
Chain: D: PDB Molecule:microcompartments protein;
PDBTitle: crystal structure of ethanolamine utilization protein eutl from2 leptotrichia buccalis c-1013-b
98c6cp8D_



not modelled 11.3 39
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:cdii;
PDBTitle: contact-dependent growth inhibition toxin-immunity protein complex2 from from e. coli 3006
99c4fmoB_



not modelled 11.1 32
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein pms1;
PDBTitle: structure of the c-terminal domain of the saccharomyces cerevisiae2 mutl alpha (mlh1/pms1) heterodimer bound to a fragment of exo1

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