Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1398c_(-)_1574516_1574773
DateWed Jul 31 22:05:50 BST 2019
Unique Job ID8c7e9335cb31a0f0
SequenceMKRTNIYLDE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.174 Y:37.491 Z:40.188
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 98.0% Coverage: 66%
56 residues ( 66% of your sequence) have been modelled with 98.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_
98.0 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c1q5vB_
93.7 40
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
3c2ca9B_
92.7 28
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
4d2bj7a1
92.7 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
5c2bj3D_
91.7 23
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
6c5x3tA_
89.4 36
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
7d2hzab1
86.2 38
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
8d2hzaa1
85.0 38
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c3kk4B_
75.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
10c3h87D_
69.9 50
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
11d2bsqe1
58.1 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
12c1ea4K_
56.3 34
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
13d2cpga_
56.3 34
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
14c2mdvB_
52.8 35
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
15c2oviA_
45.5 24
PDB header:ligand binding protein, metal transport
Chain: A: PDB Molecule:hypothetical protein chux;
PDBTitle: structure of the heme binding protein chux
16c2zp2B_
41.1 21
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
17c2ph0A_
39.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia carotovora.2 nesg target ewr41.
18c6noyB_
38.8 21
PDB header:structural protein
Chain: B: PDB Molecule:maintenance of carboxysome positioning b protein, mcsb;
PDBTitle: structure of cyanothece mcdb
19c6cetM_
37.9 32
PDB header:signaling protein
Chain: M: PDB Molecule:gator complex protein nprl3;
PDBTitle: cryo-em structure of gator1
20c2h1oH_
37.3 27
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
21d2phcb1
not modelled 35.4 16
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
22c5dudB_
not modelled 33.1 19
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
23c5exvD_
not modelled 32.1 15
PDB header:heme-binding protein
Chain: D: PDB Molecule:hemin-degrading hems.chux domain protein;
PDBTitle: crystal structure of heme binding protein hutx from vibrio cholerae
24d1kska3
not modelled 30.1 45
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
25c2k29A_
not modelled 26.7 26
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
26c4ayaA_
not modelled 21.9 38
PDB header:cell cycle
Chain: A: PDB Molecule:dna-binding protein inhibitor id-2;
PDBTitle: crystal structure of id2 hlh homodimer at 2.1a resolution
27c6g1nB_
not modelled 21.7 18
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
28c1x93B_
not modelled 21.6 32
PDB header:transcription
Chain: B: PDB Molecule:hypothetical protein hp0222;
PDBTitle: nmr structure of helicobacter pylori hp0222
29d1x93a1
not modelled 21.6 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
30c2zdqA_
not modelled 19.5 39
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8
31c2phcB_
not modelled 19.0 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
32c6qeqD_
not modelled 17.0 15
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
33c4me7E_
not modelled 16.3 33
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
34c3ebnD_
not modelled 15.8 26
PDB header:hydrolase
Chain: D: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping
35c4cimP_
not modelled 15.6 50
PDB header:apoptosis
Chain: P: PDB Molecule:bcl-2-like protein 2;
PDBTitle: complex of a bcl-w bh3 mutant with a bh3 domain
36c4cimQ_
not modelled 15.6 50
PDB header:apoptosis
Chain: Q: PDB Molecule:bcl-2-like protein 2;
PDBTitle: complex of a bcl-w bh3 mutant with a bh3 domain
37c4q2uM_
not modelled 14.2 18
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
38c3se7A_
not modelled 13.7 30
PDB header:ligase
Chain: A: PDB Molecule:vana;
PDBTitle: ancient vana
39c3mkyP_
not modelled 11.1 29
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
40c1zgwA_
not modelled 11.0 36
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
41c2pn0D_
not modelled 10.0 13
PDB header:transcription
Chain: D: PDB Molecule:prokaryotic transcription elongation factor
PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea
42c2an7A_
not modelled 9.6 32
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
43c2a8vA_
not modelled 9.6 25
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
44c2ypbB_
not modelled 9.1 21
PDB header:immune system
Chain: B: PDB Molecule:transcription factor e2-alpha;
PDBTitle: structure of the scl:e47 complex bound to dna
45d1bl0a1
not modelled 9.1 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
46d1uklc_
not modelled 8.8 36
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
47c4athB_
not modelled 8.3 33
PDB header:dna binding protein
Chain: B: PDB Molecule:microphthalmia-associated transcription factor;
PDBTitle: mitf apo structure
48c5j3nA_
not modelled 7.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:green fluorescent protein,hsdr;
PDBTitle: c-terminal domain of ecor124i hsdr subunit fused with the ph-sensitive2 gfp variant ratiometric phluorin
49c2krxA_
not modelled 7.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
50c6a7vU_
not modelled 7.2 39
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
51d2hq2a1
not modelled 7.1 14
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
52c2o1sC_
not modelled 7.0 15
PDB header:transferase
Chain: C: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 escherichia coli
53d2fi0a1
not modelled 6.9 22
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
54c2lfhA_
not modelled 6.9 40
PDB header:dna binding protein inhibitor
Chain: A: PDB Molecule:dna-binding protein inhibitor id-3;
PDBTitle: solution nmr structure of the helix-loop-helix domain of human id32 protein, northeast structural genomics consortium target hr3111a
55c2jgdA_
not modelled 6.9 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-oxoglutarate dehydrogenase e1 component;
PDBTitle: e. coli 2-oxoglutarate dehydrogenase (e1o)
56c4fxeB_
not modelled 6.8 26
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
57c5ukhA_
not modelled 6.4 45
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of telc from streptococcus intermedius b196
58c3mkzU_
not modelled 6.4 29
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
59c5gnjI_
not modelled 6.2 29
PDB header:dna binding protein/dna
Chain: I: PDB Molecule:transcription factor myc2;
PDBTitle: structure of a transcription factor and dna complex
60c5z08C_
not modelled 6.1 27
PDB header:cell cycle
Chain: C: PDB Molecule:cenp-k;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
61c4egjD_
not modelled 6.1 29
PDB header:ligase
Chain: D: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase from burkholderia2 xenovorans
62c5dmxC_
not modelled 6.1 29
PDB header:ligase
Chain: C: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase from acinetobacter2 baumannii, space group p212121
63c5ytpA_
not modelled 6.0 39
PDB header:dna binding protein
Chain: A: PDB Molecule:ttha0139;
PDBTitle: crystal structure of ttha0139 l34a from thermus thermophilus hb8
64c3u5vA_
not modelled 6.0 21
PDB header:transcription
Chain: A: PDB Molecule:protein max, transcription factor e2-alpha chimera;
PDBTitle: crystal structure of max-e47
65c4dg7D_
not modelled 5.9 28
PDB header:dna binding protein
Chain: D: PDB Molecule:gm27569p;
PDBTitle: low resolution structure of drosophila translin
66c3lfjB_
not modelled 5.9 24
PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n-
PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis
67d2gmga1
not modelled 5.7 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
68d1an4a_
not modelled 5.6 18
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
69c3r23B_
not modelled 5.5 25
PDB header:ligase
Chain: B: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis
70c2wttH_
not modelled 5.5 22
PDB header:transcription
Chain: H: PDB Molecule:tumor protein p73;
PDBTitle: structure of the human p73 tetramerization domain (crystal form ii)
71d2fnoa2
not modelled 5.4 38
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
72d1hr6a1
not modelled 5.4 18
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
73c4luqB_
not modelled 5.4 40
PDB header:protein binding/toxin inhibitor
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of virulence effector tse3 in complex with2 neutralizer tsi3
74c5x3hA_
not modelled 5.3 26
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the y81g mutant of the ung crystal structure from nitratifractor2 salsuginis

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