Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1411c_(lprG)_1587778_1588488
DateWed Jul 31 22:05:52 BST 2019
Unique Job IDb1c73d673a2e1d2b
SequenceMRTPRRHCRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.154 Y:41.227 Z:45.139
Model (left) based on template c3mhaB_
Top template information
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
Confidence and coverage
Confidence:100.0% Coverage: 82%
193 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3mhaB_
100.0 100
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
2d2byoa1
100.0 30
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:LppX-like
3c4qa8A_
100.0 30
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
4c3buuB_
98.6 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized lola superfamily protein ne2245;
PDBTitle: crystal structure of lola superfamily protein ne2245 from2 nitrosomonas europaea
5c4mxtA_
98.0 11
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an outer-membrane lipoprotein carrier protein2 (bacuni_04723) from bacteroides uniformis atcc 8492 at 1.40 a3 resolution
6c6in8A_
97.3 13
PDB header:membrane protein
Chain: A: PDB Molecule:sigma factor algu regulatory protein mucb;
PDBTitle: crystal structure of mucb
7c2v43A_
94.9 15
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
8c3bk5A_
92.6 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative outer membrane lipoprotein-sorting protein;
PDBTitle: crystal structure of putative outer membrane lipoprotein-sorting2 protein domain from vibrio parahaemolyticus
9c4z48B_
88.5 13
PDB header:structural biology, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1329 family protein (despig_00262) from2 desulfovibrio piger atcc 29098 at 1.75 a resolution
10c2w7qB_
86.1 9
PDB header:protein transport
Chain: B: PDB Molecule:outer-membrane lipoprotein carrier protein;
PDBTitle: structure of pseudomonas aeruginosa lola
11d1iwla_
66.4 14
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:Outer-membrane lipoproteins carrier protein LolA
12c3woaA_
54.0 6
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
13c4mjsQ_
45.5 38
PDB header:transferase/protein binding
Chain: Q: PDB Molecule:protein kinase c zeta type;
PDBTitle: crystal structure of a pb1 complex
14c4a4fA_
19.6 15
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
15d1mhna_
19.1 11
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
16c3ls1A_
18.3 12
PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
17d2d9ta1
16.7 17
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
18c3pnwX_
16.4 18
PDB header:protein binding/immune system
Chain: X: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab
19c1g5vA_
16.2 11
PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
20c2d9tA_
16.2 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse
21d1ueba2
not modelled 14.5 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
22c6gwjD_
not modelled 13.3 10
PDB header:rna binding protein
Chain: D: PDB Molecule:ekc/keops complex subunit gon7;
PDBTitle: protein complex
23d1v0aa1
not modelled 12.9 9
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:CBM11
24d1jrma_
not modelled 12.1 24
Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
25c6e5fA_
not modelled 9.1 23
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein lpqn;
PDBTitle: crystal structure of lpqn involved in cell envelope biogenesis of2 mycobacterium tuberculosis
26d2gysa2
not modelled 7.4 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
27c2m1hA_
not modelled 7.1 11
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: solution structure of a pwwp domain from trypanosoma brucei
28c4f98A_
not modelled 7.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf2790 family protein (pa3229) from2 pseudomonas aeruginosa pao1 at 1.26 a resolution
29c2lojA_
not modelled 6.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of tstm1273 from salmonella typhimurium lt2,2 nesg target stt322, csgid target idp01027 and ocsp target tstm1273
30c2jraB_
not modelled 6.2 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein rpa2121;
PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6
31c5o60Y_
not modelled 6.0 21
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
32c6gvwJ_
not modelled 5.9 33
PDB header:signaling protein
Chain: J: PDB Molecule:brca1-a complex subunit rap80;
PDBTitle: crystal structure of the brca1-a complex
33c5e7tI_
not modelled 5.5 21
PDB header:viral protein
Chain: I: PDB Molecule:major structural protein 1;
PDBTitle: structure of the tripod (bppuct-a-l) from the baseplate of2 bacteriophage tuc2009
34c3p8dB_
not modelled 5.5 16
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
35c2x34A_
not modelled 5.4 18
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:cellulose-binding protein, x158;
PDBTitle: structure of a polyisoprenoid binding domain from saccharophagus2 degradans implicated in plant cell wall breakdown
36c5x7hA_
not modelled 5.2 13
PDB header:transferase
Chain: A: PDB Molecule:cycloisomaltooligosaccharide glucanotransferase;
PDBTitle: crystal structure of paenibacillus sp. 598k2 cycloisomaltooligosaccharide glucanotransferase complexed with3 cycloisomaltoheptaose
37c2hqxB_
not modelled 5.2 9
PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region

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