Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1412_(ribC)_1588573_1589178
DateWed Jul 31 22:05:52 BST 2019
Unique Job IDa56ed66f96011738
SequenceMFTGIVEERG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.184 Y:47.570 Z:52.363
Model (left) based on template c4e0fB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase subunit alpha;
PDBTitle: crystallographic structure of trimeric riboflavin synthase from2 brucella abortus in complex with riboflavin
Confidence and coverage
Confidence:100.0% Coverage: 98%
197 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4e0fB_



100.0 37
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase subunit alpha;
PDBTitle: crystallographic structure of trimeric riboflavin synthase from2 brucella abortus in complex with riboflavin
2c1kzlA_



100.0 39
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase;
PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine
3c1i8dB_



100.0 36
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase;
PDBTitle: crystal structure of riboflavin synthase
4c3a35B_



100.0 26
PDB header:luminescent protein
Chain: B: PDB Molecule:lumazine protein;
PDBTitle: crystal structure of lump complexed with riboflavin
5c3ddyA_



100.0 28
PDB header:luminescent protein
Chain: A: PDB Molecule:lumazine protein;
PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria
6d1kzla2



100.0 36
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
7d1i8da2



100.0 37
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
8c1i18B_



100.0 36
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli
9c1hzeB_



100.0 36
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli
10d1i8da1



100.0 35
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
11c1pkvA_



100.0 36
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin
12d1kzla1



100.0 43
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
13c1pkvB_



100.0 36
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin
14c5opjA_



79.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:rhamnogalacturonan lyase;
PDBTitle: rhamnogalacturonan lyase
15d1a3xa1



69.5 25
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
16d1pkla1



69.1 18
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
17c5mqoA_



66.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: glycoside hydrolase bt_1003
18c4qk0C_



66.1 18
PDB header:hydrolase
Chain: C: PDB Molecule:gh127 beta-l-arabinofuranoside;
PDBTitle: crystal structure of ara127n-se, a gh127 beta-l-arabinofuranosidase2 from geobacillus stearothermophilus t6
19d2g50a1



57.6 29
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
20c6ex6A_



53.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:six-hairpin glycosidase;
PDBTitle: the gh127, beta-arabinofuranosidase, bt3674
21c1vw4N_



not modelled 48.2 16
PDB header:ribosome
Chain: N: PDB Molecule:54s ribosomal protein l49, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
22d1ep3b1



not modelled 47.2 15
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
23c3o44G_



not modelled 41.0 35
PDB header:toxin
Chain: G: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore
24d1krha1



not modelled 40.5 14
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
25d1liua1



not modelled 37.7 22
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
26c1xezA_



not modelled 35.0 35
PDB header:toxin
Chain: A: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound
27c6cqoH_



not modelled 35.0 16
PDB header:dna binding protein
Chain: H: PDB Molecule:single-stranded dna-binding protein rim1, mitochondrial;
PDBTitle: crystal structure of mitochondrial single-stranded dna binding2 proteins from s. cerevisiae (semet labeled), rim1 (form2)
28c3wkxA_



not modelled 33.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: crystal structure of gh127 beta-l-arabinofuranosidase hypba1 from2 bifidobacterium longum arabinose complex form
29d1e0ta1



not modelled 32.8 24
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
30d1pkma1



not modelled 31.1 22
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
31c3ca9A_



not modelled 30.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine triphosphatase;
PDBTitle: evolution of chlorella virus dutpase
32c4pwuC_



not modelled 29.7 13
PDB header:signaling protein
Chain: C: PDB Molecule:modulator protein mzra;
PDBTitle: crystal structure of a modulator protein mzra (kpn_03524) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 2.45 a3 resolution
33d1f7da_



not modelled 29.5 15
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
34c5xrwA_



not modelled 29.3 18
PDB header:motor protein
Chain: A: PDB Molecule:flin;
PDBTitle: crystal structure of flagellar motor switch complex from h. pylori
35c3c3iA_



not modelled 28.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine triphosphatase;
PDBTitle: evolution of chlorella virus dutpase
36d1duna_



not modelled 28.0 15
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
37d1f7ra_



not modelled 27.7 20
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
38c5vjyC_



not modelled 27.4 19
PDB header:hydrolase
Chain: C: PDB Molecule:dutp pyrophosphatase;
PDBTitle: crystal structure of dutp pyrophosphatase protein, from naegleria2 fowleri
39c2d4nA_



not modelled 27.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:du;
PDBTitle: crystal structure of m-pmv dutpase complexed with dupnpp, substrate2 analogue
40d1zbfa1



not modelled 26.4 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
41d1tvca1



not modelled 24.4 19
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
42d1fdra1



not modelled 22.4 13
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
43c2zp2B_



not modelled 22.2 18
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
44c2okdB_



not modelled 22.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: high resolution crystal structures of vaccinia virus dutpase
45c1v0eB_



not modelled 21.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-sialidase;
PDBTitle: endosialidase of bacteriophage k1f
46c4or1B_



not modelled 20.1 50
PDB header:cell adhesion
Chain: B: PDB Molecule:invasin homolog aafb, major fimbrial subunit of aggregative
PDBTitle: structure and mechanism of fibronectin binding and biofilm formation2 of enteroaggregative escherischia coli aaf fimbriae
47d1q5uz_



not modelled 19.6 17
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
48c3lqwA_



not modelled 18.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of deoxyuridine 5-triphosphate2 nucleotidohydrolase from entamoeba histolytica
49c5hbzE_



not modelled 18.7 32
PDB header:hydrolase
Chain: E: PDB Molecule:non-structural protein 11;
PDBTitle: structure of eav nsp11 k170a mutant at 3.10a
50c1zeqX_



not modelled 18.7 26
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
51c4bwdA_



not modelled 18.3 38
PDB header:structural protein
Chain: A: PDB Molecule:short coiled-coil protein;
PDBTitle: human short coiled coil protein
52c3ehwA_



not modelled 18.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:dutp pyrophosphatase;
PDBTitle: human dutpase in complex with alpha,beta-imido-dutp and mg2+:2 visualization of the full-length c-termini in all monomers and3 suggestion for an additional metal ion binding site
53c2wg6L_



not modelled 18.1 16
PDB header:transcription,hydrolase
Chain: L: PDB Molecule:general control protein gcn4, proteasome-activating
PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134) from2 archaeoglobus fulgidus fused to gcn4, p61a mutant
54d1lqsl_



not modelled 18.0 25
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
55c5mmiS_



not modelled 17.3 15
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l21, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
56d1vlka_



not modelled 17.2 31
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
57c3nrfA_



not modelled 17.1 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:apag protein;
PDBTitle: crystal structure of an apag protein (pa1934) from pseudomonas2 aeruginosa pao1 at 1.50 a resolution
58c3qtgA_



not modelled 16.9 15
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pyruvate kinase from pyrobaculum aerophilum
59d1lk3a_



not modelled 16.9 31
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
60c3so2A_



not modelled 15.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: chlorella dutpase
61c3h43F_



not modelled 15.5 27
PDB header:hydrolase
Chain: F: PDB Molecule:proteasome-activating nucleotidase;
PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii
62c3mmlD_



not modelled 14.7 14
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
63c5o57A_



not modelled 14.7 40
PDB header:signaling protein
Chain: A: PDB Molecule:dickkopf-related protein 4;
PDBTitle: solution structure of the n-terminal region of dkk4
64d1vqoq1



not modelled 14.6 24
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
65c3j21R_



not modelled 14.4 29
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l21e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
66d1k8kg_



not modelled 14.2 29
Fold:alpha-alpha superhelix
Superfamily:Arp2/3 complex 16 kDa subunit ARPC5
Family:Arp2/3 complex 16 kDa subunit ARPC5
67c2izpB_



not modelled 13.8 31
PDB header:toxin
Chain: B: PDB Molecule:putative membrane antigen;
PDBTitle: bipd - an invasion prtein associated with the type-iii2 secretion system of burkholderia pseudomallei.
68c3mbqC_



not modelled 13.4 19
PDB header:hydrolase
Chain: C: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase2 from brucella melitensis, orthorhombic crystal form
69c5mlcT_



not modelled 13.3 15
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l21, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
70c2lmcB_



not modelled 13.1 6
PDB header:transcription
Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: structure of t7 transcription factor gp2-e. coli rnap jaw domain2 complex
71d2phcb1



not modelled 12.8 18
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
72c3uiyA_



not modelled 12.8 19
PDB header:structural protein
Chain: A: PDB Molecule:chimera protein of sefd and sefa;
PDBTitle: crystal structure of sefd_dsca in h2o
73d2izpa1



not modelled 12.7 31
Fold:IpaD-like
Superfamily:IpaD-like
Family:IpaD-like
74c2jz2A_



not modelled 12.6 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
75c2zkrq_



not modelled 12.6 18
PDB header:ribosomal protein/rna
Chain: Q: PDB Molecule:rna expansion segment es31 part ii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
76c4ce4V_



not modelled 12.1 17
PDB header:ribosome
Chain: V: PDB Molecule:mrpl21;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
77c4bq7D_



not modelled 12.1 27
PDB header:cell adhesion
Chain: D: PDB Molecule:rgm domain family member b;
PDBTitle: crystal structure of the rgmb-neo1 complex form 2
78d3ehwa1



not modelled 12.0 17
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
79c3f4fB_



not modelled 11.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of dut1p, a dutpase from saccharomyces cerevisiae
80c3mtvA_



not modelled 11.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:papain-like cysteine protease;
PDBTitle: the crystal structure of the prrsv nonstructural protein nsp1
81d3bzka4



not modelled 11.5 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
82d1o6aa_



not modelled 11.4 18
Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
83c5vgzC_



not modelled 11.3 13
PDB header:hydrolase
Chain: C: PDB Molecule:26s proteasome regulatory subunit 8;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
84c1s1iQ_



not modelled 11.1 29
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l21-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
85d2ilka_



not modelled 10.8 31
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
86c3zleI_



not modelled 10.6 17
PDB header:membrane protein
Chain: I: PDB Molecule:apical membrane antigen 1;
PDBTitle: crystal structure of toxoplasma gondii sporozoite ama1
87d1a8pa1



not modelled 10.5 12
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
88c5vgzF_



not modelled 10.3 17
PDB header:hydrolase
Chain: F: PDB Molecule:26s proteasome regulatory subunit 6a;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
89c5da1B_



not modelled 10.3 18
PDB header:hydrolase
Chain: B: PDB Molecule:endoribonuclease;
PDBTitle: a dimerization-dependent mechanism drives prrsv nsp11 functions as a2 beta interferon antagonist and endoribonuclease
90c3kf8D_



not modelled 10.3 24
PDB header:structural protein
Chain: D: PDB Molecule:protein ten1;
PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex
91c4yxaB_



not modelled 10.2 16
PDB header:protein transport
Chain: B: PDB Molecule:surface presentation of antigens protein spao;
PDBTitle: complex of spao(spoa1,2 semet) and orgb(apar)::t4lysozyme fusion2 protein
92d1vkpa_



not modelled 10.1 25
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
93c2l55A_



not modelled 9.9 11
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
94c2p9oB_



not modelled 9.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:dutp pyrophosphatase-like protein;
PDBTitle: structure of dutpase from arabidopsis thaliana
95c3e0eA_



not modelled 9.8 20
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
96c3voqA_



not modelled 9.4 33
PDB header:membrane protein
Chain: A: PDB Molecule:target of rapamycin complex 2 subunit mapkap1;
PDBTitle: crystal structure of the pleckstrin homology domain of human sin1, a2 torc2 subunit
97c3iz5U_



not modelled 9.4 35
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
98c3izcU_



not modelled 9.2 29
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
99d1r9fa_



not modelled 9.1 55
Fold:Tombusvirus P19 core protein, VP19
Superfamily:Tombusvirus P19 core protein, VP19
Family:Tombusvirus P19 core protein, VP19

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