Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1414_(-)_1589897_1590298
DateWed Jul 31 22:05:52 BST 2019
Unique Job IDda45a691ece3ce56
SequenceVLGDAQQLEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.382 Y:46.120 Z:40.696
Model (left) based on template c3anuA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:d-serine dehydratase;
PDBTitle: crystal structure of d-serine dehydratase from chicken kidney
Confidence and coverage
Confidence:100.0% Coverage: 95%
126 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3anuA_



100.0 27
PDB header:lyase
Chain: A: PDB Molecule:d-serine dehydratase;
PDBTitle: crystal structure of d-serine dehydratase from chicken kidney
2c4v15B_



100.0 31
PDB header:lyase
Chain: B: PDB Molecule:d-threonine aldolase;
PDBTitle: crystal structure of d-threonine aldolase from alcaligenes2 xylosoxidans
3c3wqgB_



100.0 25
PDB header:lyase
Chain: B: PDB Molecule:d-threo-3-hydroxyaspartate dehydratase;
PDBTitle: d-threo-3-hydroxyaspartate dehydratase c353a mutant in the metal-free2 form
4c3llxA_



100.0 22
PDB header:isomerase
Chain: A: PDB Molecule:predicted amino acid aldolase or racemase;
PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution
5c3gwqB_



100.0 22
PDB header:lyase
Chain: B: PDB Molecule:d-serine deaminase;
PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution
6c2dy3B_



97.6 14
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum
7c5irpA_



97.5 17
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 2;
PDBTitle: crystal structure of the alanine racemase bsu17640 from bacillus2 subtilis
8c4y2wA_



97.2 20
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 1;
PDBTitle: crystal structure of a thermostable alanine racemase from2 thermoanaerobacter tengcongensis mb4
9c1xfcB_



96.9 13
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site
10c4tloB_



96.9 14
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: alanine racemase from acinetobacter baumannii
11c3oo2B_



95.9 23
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase 1;
PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col
12c5yycC_



95.7 13
PDB header:isomerase
Chain: C: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from bacillus pseudofirmus (of4)
13c2yxxA_



94.8 17
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa)
14c4kbxA_



94.3 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yhfx;
PDBTitle: crystal structure of the pyridoxal-5'-phosphate dependent protein yhfx2 from escherichia coli
15c4eclA_



93.8 16
PDB header:isomerase
Chain: A: PDB Molecule:serine racemase;
PDBTitle: crystal structure of the cytoplasmic domain of vancomycin resistance2 serine racemase vantg
16c1vftA_



92.7 13
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae
17c4lusD_



91.6 11
PDB header:isomerase
Chain: D: PDB Molecule:alanine racemase;
PDBTitle: alanine racemase [clostridium difficile 630]
18c3kw3B_



89.0 21
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate
19c2rjgC_



88.8 14
PDB header:isomerase
Chain: C: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of biosynthetic alaine racemase from escherichia2 coli
20c4bf5A_



88.7 17
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: structure of broad spectrum racemase from aeromonas hydrophila
21c3mt1B_



not modelled 82.9 15
PDB header:lyase
Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein;
PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti
22c2odoC_



not modelled 81.3 17
PDB header:isomerase
Chain: C: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase
23c4dzaA_



not modelled 81.3 15
PDB header:isomerase
Chain: A: PDB Molecule:lysine racemase;
PDBTitle: crystal structure of a lysine racemase within internal aldimine2 linkage
24c5bwaA_



not modelled 80.8 15
PDB header:lyase/lyase inhibitor
Chain: A: PDB Molecule:ornithine decarboxylase;
PDBTitle: crystal structure of odc-plp-az1 ternary complex
25c1niuA_



not modelled 79.8 16
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine
26c3co8B_



not modelled 79.5 13
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from oenococcus oeni
27c2qghA_



not modelled 75.9 14
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine
28c4beqA_



not modelled 73.3 13
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 2;
PDBTitle: structure of vibrio cholerae broad spectrum racemase double2 mutant r173a, n174a
29c5gjmB_



not modelled 69.5 14
PDB header:lyase
Chain: B: PDB Molecule:lysine/ornithine decarboxylase;
PDBTitle: crystal strcuture of lysine decarboxylase from selenomonas ruminantium2 in c2 space group
30c1tufA_



not modelled 68.3 11
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi
31c3n2bD_



not modelled 66.4 12
PDB header:lyase
Chain: D: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae.
32c3oo2A_



not modelled 65.8 24
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 1;
PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col
33c2p3eA_



not modelled 64.4 12
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure of aq1208 from aquifex aeolicus
34c4fs9B_



not modelled 63.9 19
PDB header:isomerase
Chain: B: PDB Molecule:broad specificity amino acid racemase;
PDBTitle: complex structure of a broad specificity amino acid racemase (bar)2 within the reactive intermediate
35c5zl6A_



not modelled 58.2 17
PDB header:isomerase
Chain: A: PDB Molecule:histidine racemase;
PDBTitle: histidine racemase from leuconostoc mesenteroides subsp. sake nbrc2 102480
36c6a2fB_



not modelled 57.2 21
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase, biosynthetic;
PDBTitle: crystal structure of biosynthetic alanine racemase from pseudomonas2 aeruginosa
37c5x7nA_



not modelled 55.2 20
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal strcuture of meso-diaminopimelate decarboxylase (dapdc) from2 corynebacterium glutamicum
38c3cosD_



not modelled 48.3 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 4;
PDBTitle: crystal structure of human class ii alcohol dehydrogenase (adh4) in2 complex with nad and zn
39c1ma0B_



not modelled 44.7 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione-dependent formaldehyde dehydrogenase;
PDBTitle: ternary complex of human glutathione-dependent formaldehyde2 dehydrogenase with nad+ and dodecanoic acid
40c2pljA_



not modelled 41.3 15
PDB header:lyase
Chain: A: PDB Molecule:lysine/ornithine decarboxylase;
PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus
41c2ouiB_



not modelled 39.3 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase;
PDBTitle: d275p mutant of alcohol dehydrogenase from protozoa entamoeba2 histolytica
42c3ukoA_



not modelled 38.1 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase class-3;
PDBTitle: crystal structure of s-nitrosoglutathione reductase from arabidopsis2 thaliana, complex with nadh
43c3mubB_



not modelled 36.2 26
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: the crystal structure of alanine racemase from streptococcus2 pneumoniae
44d2toda1



not modelled 35.7 18
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Alanine racemase C-terminal domain-like
Family:Eukaryotic ODC-like
45c2nvaH_



not modelled 35.5 14
PDB header:lyase
Chain: H: PDB Molecule:arginine decarboxylase, a207r protein;
PDBTitle: the x-ray crystal structure of the paramecium bursaria chlorella virus2 arginine decarboxylase bound to agmatine
46c4rquA_



not modelled 35.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: alcohol dehydrogenase crystal structure in complex with nad
47c4gi2B_



not modelled 34.0 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:crotonyl-coa carboxylase/reductase;
PDBTitle: crotonyl-coa carboxylase/reductase
48c1knwA_



not modelled 32.9 18
PDB header:lyase
Chain: A: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: crystal structure of diaminopimelate decarboxylase
49c5ylnB_



not modelled 32.8 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase, zinc-containing;
PDBTitle: zinc dependent alcohol dehydrogenase 2 from streptococcus pneumonia -2 apo form
50c1r37B_



not modelled 31.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad-dependent alcohol dehydrogenase;
PDBTitle: alcohol dehydrogenase from sulfolobus solfataricus2 complexed with nad(h) and 2-ethoxyethanol
51c1e3jA_



not modelled 30.8 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp(h)-dependent ketose reductase;
PDBTitle: ketose reductase (sorbitol dehydrogenase) from silverleaf2 whitefly
52c5vm2A_



not modelled 30.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of eck1772, an oxidoreductase/dehydrogenase of2 unknown specificity involved in membrane biogenesis from escherichia3 coli
53c4cpdA_



not modelled 29.5 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: alcohol dehydrogenase tadh from thermus sp. atn1
54c5kiaA_



not modelled 29.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-threonine 3-dehydrogenase;
PDBTitle: crystal structure of l-threonine 3-dehydrogenase from burkholderia2 thailandensis
55c1kolA_



not modelled 28.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:formaldehyde dehydrogenase;
PDBTitle: crystal structure of formaldehyde dehydrogenase
56c5k1sD_



not modelled 26.1 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, zinc-binding dehydrogenase family;
PDBTitle: crystal structure of aibc
57c2j66A_



not modelled 25.6 13
PDB header:lyase
Chain: A: PDB Molecule:btrk;
PDBTitle: structural characterisation of btrk decarboxylase from2 butirosin biosynthesis
58c4ilkB_



not modelled 24.9 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:starvation sensing protein rspb;
PDBTitle: crystal structure of short chain alcohol dehydrogenase (rspb) from e.2 coli cft073 (efi target efi-506413) complexed with cofactor nadh
59c4gkvC_



not modelled 24.8 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:alcohol dehydrogenase, propanol-preferring;
PDBTitle: structure of escherichia coli adhp (ethanol-inducible dehydrogenase)2 with bound nad
60c2eihA_



not modelled 24.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of nad-dependent alcohol dehydrogenase
61c3hurA_



not modelled 22.8 17
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from oenococcus oeni
62c2dphA_



not modelled 22.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:formaldehyde dismutase;
PDBTitle: crystal structure of formaldehyde dismutase
63c4a2cB_



not modelled 21.9 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:galactitol-1-phosphate 5-dehydrogenase;
PDBTitle: crystal structure of galactitol-1-phosphate dehydrogenase from2 escherichia coli
64c4eezB_



not modelled 21.6 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase 1;
PDBTitle: crystal structure of lactococcus lactis alcohol dehydrogenase variant2 re1
65c3krtC_



not modelled 20.7 8
PDB header:oxidoreductase
Chain: C: PDB Molecule:crotonyl coa reductase;
PDBTitle: crystal structure of putative crotonyl coa reductase from streptomyces2 coelicolor a3(2)
66c1h2bA_



not modelled 20.7 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of the alcohol dehydrogenase from the2 hyperthermophilic archaeon aeropyrum pernix at 1.65a resolution
67c3m6iA_



not modelled 20.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-arabinitol 4-dehydrogenase;
PDBTitle: l-arabinitol 4-dehydrogenase
68c2dfvB_



not modelled 19.8 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable l-threonine 3-dehydrogenase;
PDBTitle: hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii
69c2ejvA_



not modelled 19.3 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-threonine 3-dehydrogenase;
PDBTitle: crystal structure of threonine 3-dehydrogenase complexed with nad+
70c1cdoB_



not modelled 18.1 7
PDB header:oxidoreductase (ch-oh(d)-nad(a))
Chain: B: PDB Molecule:alcohol dehydrogenase;
PDBTitle: alcohol dehydrogenase (e.c.1.1.1.1) (ee isozyme) complexed with2 nicotinamide adenine dinucleotide (nad), and zinc
71c3qf4B_



not modelled 17.9 23
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized abc transporter atp-binding protein
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
72c1hf3A_



not modelled 17.8 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase e chain;
PDBTitle: atomic x-ray structure of liver alcohol dehydrogenase containing2 cadmium and a hydroxide adduct to nadh
73c2dxcG_



not modelled 17.4 20
PDB header:hydrolase
Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha;
PDBTitle: recombinant thiocyanate hydrolase, fully-matured form
74c3b5xB_



not modelled 17.4 23
PDB header:membrane protein
Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of msba from vibrio cholerae
75d2nqra1



not modelled 17.1 22
Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
76c2qf4A_



not modelled 16.6 35
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
77c3qz9D_



not modelled 15.8 17
PDB header:lyase
Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida.
78c2j5uB_



not modelled 15.7 27
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
79c1kevB_



not modelled 15.7 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase;
PDBTitle: structure of nadp-dependent alcohol dehydrogenase
80c4ejmA_



not modelled 15.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative zinc-binding dehydrogenase;
PDBTitle: crystal structure of a putative zinc-binding dehydrogenase (target2 psi-012003) from sinorhizobium meliloti 1021 bound to nadp
81c1pl6A_



not modelled 14.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:sorbitol dehydrogenase;
PDBTitle: human sdh/nadh/inhibitor complex
82c5mkkA_



not modelled 14.7 28
PDB header:transport protein
Chain: A: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
83c1lluD_



not modelled 14.3 8
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase;
PDBTitle: the ternary complex of pseudomonas aeruginosa alcohol2 dehydrogenase with its coenzyme and weak substrate
84c2cf5A_



not modelled 14.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:cinnamyl alcohol dehydrogenase;
PDBTitle: crystal structures of the arabidopsis cinnamyl alcohol2 dehydrogenases, atcad5
85c1s1iQ_



not modelled 13.5 20
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l21-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
86d2ix0a3



not modelled 13.4 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
87c1p0fA_



not modelled 12.9 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp-dependent alcohol dehydrogenase;
PDBTitle: crystal structure of the binary complex: nadp(h)-dependent vertebrate2 alcohol dehydrogenase (adh8) with the cofactor nadp
88c3j21R_



not modelled 12.7 12
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l21e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
89d1vqoq1



not modelled 12.5 8
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e
90c5ochH_



not modelled 12.2 16
PDB header:hydrolase
Chain: H: PDB Molecule:atp-binding cassette sub-family b member 8, mitochondrial;
PDBTitle: the crystal structure of human abcb8 in an outward-facing state
91c2yl4A_



not modelled 12.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
92c2lo4A_



not modelled 11.9 36
PDB header:protein transport
Chain: A: PDB Molecule:optineurin;
PDBTitle: nmr solution structure of optineurin zinc-finger domain
93d1ugpb_



not modelled 11.8 17
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
94d1uufa1



not modelled 11.7 16
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
95d1kola1



not modelled 11.6 20
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
96c4jbiB_



not modelled 11.3 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase (zinc);
PDBTitle: 2.35a resolution structure of nadph bound thermostable alcohol2 dehydrogenase from pyrobaculum aerophilum
97c2vwpA_



not modelled 11.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose dehydrogenase;
PDBTitle: haloferax mediterranei glucose dehydrogenase in complex with nadph and2 zn.
98c3qf4A_



not modelled 10.8 16
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
99c3iz5U_



not modelled 10.7 14
PDB header:ribosome
Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

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