Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1416_(ribH)_1591677_1592159
DateWed Jul 31 22:05:52 BST 2019
Unique Job ID1c0ab7a1c29f8dd8
SequenceVKGGAGVPDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.987 Y:31.632 Z:60.734
Model (left) based on template c1w19E_
Top template information
PDB header:transferase
Chain: E: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase;
PDBTitle: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-2 trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl)propane 1-phosphate
Confidence and coverage
Confidence:100.0% Coverage: 91%
146 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1w19E_
100.0 100
PDB header:transferase
Chain: E: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase;
PDBTitle: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-2 trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl)propane 1-phosphate
2d1c41a_
100.0 36
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
3c4j07E_
100.0 81
PDB header:transferase
Chain: E: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase;
PDBTitle: crystal structure of a probable riboflavin synthase, beta chain ribh2 (6,7-dimethyl-8-ribityllumazine synthase, dmrl synthase, lumazine3 synthase) from mycobacterium leprae
4d1ejba_
100.0 36
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
5d1rvv1_
100.0 37
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
6d1nqua_
100.0 47
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
7c3mk3L_
100.0 46
PDB header:transferase
Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase;
PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2
8d1kz1a_
100.0 34
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
9c2f59B_
100.0 40
PDB header:transferase
Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
10d1c2ya_
100.0 34
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
11d1di0a_
100.0 28
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
12c2obxH_
100.0 28
PDB header:transferase
Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
13c2b99A_
97.6 17
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase;
PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor
14c4y7jE_
97.4 17
PDB header:membrane protein,transport protein
Chain: E: PDB Molecule:large conductance mechanosensitive channel protein,
PDBTitle: structure of an archaeal mechanosensitive channel in expanded state
15c5ulbA_
95.6 18
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter from yersinia2 enterocolitica subsp. enterocolitica 8081
16c5z6vA_
93.2 19
PDB header:protein transport
Chain: A: PDB Molecule:abc-type uncharacterized transport system periplasmic
PDBTitle: crystal structure of a substrate-binding protein from rhodothermus2 marinus
17c3ma0A_
92.6 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:d-xylose-binding periplasmic protein;
PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli
18c4kzkA_
92.2 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:l-arabinose abc transporter, periplasmic l-arabinose-
PDBTitle: the structure of the periplasmic l-arabinose binding protein from2 burkholderia thailandensis
19c3lftA_
92.1 19
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a
20c4yhsA_
91.5 17
PDB header:solute-binding protein
Chain: A: PDB Molecule:monosaccharide abc transporter substrate-binding protein,
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from bradyrhizobium sp. btai1 (bbta_2440, target efi-3 511490) with bound bis-tris
21c5dkvD_
not modelled 90.4 20
PDB header:sugar binding protein
Chain: D: PDB Molecule:abc transporter substrate binding protein (ribose);
PDBTitle: crystal structure of an abc transporter solute binding protein from2 agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d-3 tagatopyranose
22c3l6uA_
not modelled 90.1 16
PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from exiguobacterium sibiricum
23c5hsgA_
not modelled 90.0 14
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter, nucleotide binding/atpase
PDBTitle: crystal structure of an abc transporter solute binding protein from2 klebsiella pneumoniae (kpn_01730, target efi-511059), apo open3 structure
24c5dteD_
not modelled 89.2 19
PDB header:transport protein
Chain: D: PDB Molecule:monosaccharide-transporting atpase;
PDBTitle: crystal structure of an abc transporter periplasmic solute binding2 protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081,3 target efi-511065) with bound d-allose
25d8abpa_
not modelled 89.2 11
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
26c4irxA_
not modelled 88.5 13
PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, periplasmic sugar-binding protein;
PDBTitle: crystal structure of caulobacter myo-inositol binding protein bound to2 myo-inositol
27c3o1hB_
not modelled 87.9 15
PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
28d1gcaa_
not modelled 86.9 8
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
29c4ry8D_
not modelled 86.8 20
PDB header:transport protein
Chain: D: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of 5-methylthioribose transporter solute binding2 protein tlet_1677 from thermotoga lettingae tmo target efi-511109 in3 complex with 5-methylthioribose
30c4z0nA_
not modelled 86.8 7
PDB header:transcription
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of a periplasmic solute binding protein (ipr025997)2 from streptobacillus moniliformis dsm-12112 (smon_0317, target efi-3 511281) with bound d-galactose
31d1guda_
not modelled 86.5 11
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
32c2qh8A_
not modelled 86.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961
33c4kqcA_
not modelled 86.0 20
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: abc transporter, laci family transcriptional regulator from2 brachyspira murdochii
34c6gq0A_
not modelled 85.3 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of ganp, a glucose-galactose binding protein from2 geobacillus stearothermophilus
35c6hyhA_
not modelled 84.6 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of msmeg_1712 from mycobacterium smegmatis in2 complex with beta-d-fucofuranose
36c4yleA_
not modelled 84.5 21
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of an abc transpoter solute binding protein2 (ipr025997) from burkholderia multivorans (bmul_1631, target efi-3 511115) with an unknown ligand modelled as alpha-d-erythrofuranose
37c4yv7A_
not modelled 84.5 16
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from mycobacterium smegmatis (msmei_3018, target efi-3 511327) with bound glycerol
38c3ksmA_
not modelled 83.8 20
PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
39c2vk2A_
not modelled 83.3 15
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq;
PDBTitle: crystal structure of a galactofuranose binding protein
40c4kq9A_
not modelled 82.2 17
PDB header:transport protein
Chain: A: PDB Molecule:ribose abc transporter, substrate binding protein;
PDBTitle: crystal structure of periplasmic ribose abc transporter from2 conexibacter woesei dsm 14684
41c4rxtA_
not modelled 81.8 18
PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter;
PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 arad_9553 from agrobacterium radiobacter, target efi-511541, in3 complex with d-arabinose
42c4rk1F_
not modelled 81.8 11
PDB header:transcription regulator
Chain: F: PDB Molecule:ribose transcriptional regulator;
PDBTitle: crystal structure of laci family transcriptional regulator from2 enterococcus faecium, target efi-512930, with bound ribose
43c4wt7B_
not modelled 81.5 17
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter substrate binding protein (ribose);
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5165, target efi-511223)3 with bound allitol
44c4ry9A_
not modelled 81.5 11
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009,3 a complex with d-talitol
45c4kvfA_
not modelled 80.2 11
PDB header:transport protein
Chain: A: PDB Molecule:rhamnose abc transporter, periplasmic rhamnose-binding
PDBTitle: the crystal structure of a rhamnose abc transporter, periplasmic2 rhamnose-binding protein from kribbella flavida dsm 17836
46c5ix8A_
not modelled 76.8 11
PDB header:transport protein
Chain: A: PDB Molecule:putative sugar abc transport system, substrate-binding
PDBTitle: crystal structure of sugar abc transport system, substrate-binding2 protein from bordetella parapertussis 12822
47c3k9cA_
not modelled 75.0 24
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
48c3kkeA_
not modelled 74.8 13
PDB header:transcription regulator
Chain: A: PDB Molecule:laci family transcriptional regulator;
PDBTitle: crystal structure of a laci family transcriptional regulator from2 mycobacterium smegmatis
49d2a5la1
not modelled 74.8 10
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
50c6ndiB_
not modelled 73.9 13
PDB header:sugar binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.60 angstrom resolution crystal structure of periplasmic binding and2 sugar binding domain of laci family protein from klebsiella3 pneumoniae.
51c4rk6B_
not modelled 73.3 15
PDB header:transcription regulator
Chain: B: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of laci family transcriptional regulator ccpa from2 weissella paramesenteroides, target efi-512926, with bound glucose
52c2fn9A_
not modelled 72.9 22
PDB header:sugar binding protein
Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein;
PDBTitle: thermotoga maritima ribose binding protein unliganded form
53c5hqjA_
not modelled 72.7 19
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of abc transporter solute binding protein b1g1h72 from burkholderia graminis c4d1m, target efi-511179, in complex with3 d-arabinose
54c3tb6B_
not modelled 72.3 12
PDB header:dna binding protein
Chain: B: PDB Molecule:arabinose metabolism transcriptional repressor;
PDBTitle: structure of the effector-binding domain of arabinose repressor arar2 from bacillus subtilis
55c5bq3A_
not modelled 72.1 16
PDB header:transport protein
Chain: A: PDB Molecule:rhamnose abc transporter, rhamnose-binding protein;
PDBTitle: crystal structure of a sugar abc transporter (actodo_00688) from2 actinomyces odontolyticus atcc 17982 at 2.60 a resolution
56d1u11a_
not modelled 71.1 17
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
57c2fqxA_
not modelled 71.1 21
PDB header:transport protein
Chain: A: PDB Molecule:membrane lipoprotein tmpc;
PDBTitle: pnra from treponema pallidum complexed with guanosine
58c2fw9A_
not modelled 70.8 17
PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
59c3rotA_
not modelled 70.3 18
PDB header:transport protein
Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein;
PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
60c3h5oB_
not modelled 70.2 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator gntr;
PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
61c3qk7C_
not modelled 66.8 19
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001
62c4ry0A_
not modelled 66.1 17
PDB header:transport protein
Chain: A: PDB Molecule:probable ribose abc transporter, substrate-binding protein;
PDBTitle: crystal structure of ribose transporter solute binding protein2 rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex3 with d-ribose
63c4rxuA_
not modelled 66.0 8
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic sugar-binding protein;
PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 caur_1924 from chloroflexus aurantiacus, target efi-511158, in3 complex with d-glucose
64d1y5ea1
not modelled 65.5 20
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
65c6dspB_
not modelled 65.4 13
PDB header:signaling protein
Chain: B: PDB Molecule:autoinducer 2-binding protein lsrb;
PDBTitle: lsrb from clostridium saccharobutylicum in complex with ai-2
66c3orsD_
not modelled 64.6 15
PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
67d2fvya1
not modelled 64.2 8
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
68c3g1wB_
not modelled 63.7 14
PDB header:transport protein
Chain: B: PDB Molecule:sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
69c4rweA_
not modelled 63.7 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar-binding transport protein;
PDBTitle: the crystal structure of a sugar-binding transport protein from2 yersinia pestis co92
70c4wwhA_
not modelled 63.6 8
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi-3 510967) with bound d-galactose
71c5xsdA_
not modelled 63.6 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: xylfii-lytsn complex mutant - d103a
72c2rjoA_
not modelled 61.9 19
PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
73c5braA_
not modelled 61.5 17
PDB header:solute-binding protein
Chain: A: PDB Molecule:putative periplasmic binding protein with substrate ribose;
PDBTitle: crystal structure of a putative periplasmic solute binding protein2 (ipr025997) from ochrobactrum anthropi atcc49188 (oant_2843, target3 efi-511085)
74d2nqra3
not modelled 59.2 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
75c4qccA_
not modelled 58.1 14
PDB header:structural protein, lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-
PDBTitle: structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
76c4o5aA_
not modelled 57.4 14
PDB header:transcription regulator
Chain: A: PDB Molecule:laci family transcription regulator;
PDBTitle: the crystal structure of a laci family transcriptional regulator from2 bifidobacterium animalis subsp. lactis dsm 10140
77c2h0aA_
not modelled 56.8 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus
78c4ycsC_
not modelled 56.6 14
PDB header:hydrolase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative lipoprotein from peptoclostridium2 difficile 630 (fragment)
79c4wzzA_
not modelled 56.4 14
PDB header:transport protein
Chain: A: PDB Molecule:putative sugar abc transporter, substrate-binding protein;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentas (cphy_0583, target efi-3 511148) with bound l-rhamnose
80c4joqA_
not modelled 55.2 17
PDB header:transport protein
Chain: A: PDB Molecule:abc ribose transporter, periplasmic solute-binding protein;
PDBTitle: putative ribose abc transporter, periplasmic solute-binding protein2 from rhodobacter sphaeroides
81c4pevB_
not modelled 55.1 19
PDB header:solute-binding protein
Chain: B: PDB Molecule:membrane lipoprotein family protein;
PDBTitle: crystal structure of abc transporter system solute-binding proteins2 from aeropyrum pernix k1
82c3lp6D_
not modelled 54.9 23
PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
83c3cs3A_
not modelled 54.6 8
PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis
84c4yo7A_
not modelled 54.4 12
PDB header:solute binding protein
Chain: A: PDB Molecule:sugar abc transporter (sugar-binding protein);
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from bacillus halodurans c-125 (bh2323, target efi-3 511484) with bound myo-inositol
85c5er3A_
not modelled 53.2 22
PDB header:solute-binding protein
Chain: A: PDB Molecule:sugar abc transporter, periplasmic sugar-binding protein;
PDBTitle: crystal structure of abc transporter system solute-binding protein2 from rhodopirellula baltica sh 1
86c3bilA_
not modelled 53.0 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable laci-family transcriptional regulator;
PDBTitle: crystal structure of a probable laci family transcriptional regulator2 from corynebacterium glutamicum
87c4fr2A_
not modelled 52.1 15
PDB header:oxidoreductase, metal binding protein
Chain: A: PDB Molecule:1,3-propanediol dehydrogenase;
PDBTitle: alcohol dehydrogenase from oenococcus oeni
88c5mp4C_
not modelled 51.0 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:protoplast secreted protein 2;
PDBTitle: the structure of pst2p from saccharomyces cerevisiae
89c4pe6B_
not modelled 50.9 18
PDB header:solute-binding protein
Chain: B: PDB Molecule:putative abc transporter;
PDBTitle: crystal structure of abc transporter solute binding protein from2 thermobispora bispora dsm 43833
90d1o4va_
not modelled 49.3 22
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
91c3s40C_
not modelled 48.8 19
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
92c3h75A_
not modelled 48.6 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic sugar-binding domain protein;
PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
93d1ydga_
not modelled 48.2 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
94c3l49D_
not modelled 48.0 11
PDB header:transport protein
Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic substrate-
PDBTitle: crystal structure of abc sugar transporter subunit from rhodobacter2 sphaeroides 2.4.1
95c2zkiH_
not modelled 47.6 18
PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
96c4gudA_
not modelled 47.6 14
PDB header:transferase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit hish;
PDBTitle: crystal structure of amidotransferase hish from vibrio cholerae
97c3e3mA_
not modelled 46.7 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a laci family transcriptional regulator from2 silicibacter pomeroyi
98c2qvcC_
not modelled 46.1 8
PDB header:transport protein
Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding protein;
PDBTitle: crystal structure of a periplasmic sugar abc transporter from2 thermotoga maritima
99c2r94B_
not modelled 45.8 22
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
100d2f7wa1
not modelled 45.4 15
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
101c5ocpA_
not modelled 45.2 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: the periplasmic binding protein component of the arabinose abc2 transporter from shewanella sp. ana-3 bound to alpha and beta-l-3 arabinofuranose
102c4rk5A_
not modelled 44.9 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of laci family transcriptional regulator from2 lactobacillus casei, target efi-512911, with bound sucrose
103c3clkB_
not modelled 44.5 12
PDB header:transcription regulator
Chain: B: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum
104c4rxmA_
not modelled 44.5 6
PDB header:transport protein
Chain: A: PDB Molecule:possible sugar abc superfamily atp binding cassette
PDBTitle: crystal structure of periplasmic abc transporter solute binding2 protein a7jw62 from mannheimia haemolytica phl213, target efi-511105,3 in complex with myo-inositol
105c2hmcA_
not modelled 44.3 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
106c3rggD_
not modelled 43.9 8
PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
107c3lq1A_
not modelled 43.7 15
PDB header:transferase
Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
PDBTitle: crystal structure of 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-2 carboxylic acid synthase/2-oxoglutarate decarboxylase from listeria3 monocytogenes str. 4b f2365
108c2nqqA_
not modelled 43.2 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
109c2qu7B_
not modelled 42.8 10
PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcription regulator from2 staphylococcus saprophyticus subsp. saprophyticus
110c3d8uA_
not modelled 42.7 17
PDB header:transcription regulator
Chain: A: PDB Molecule:purr transcriptional regulator;
PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633
111c3o74A_
not modelled 42.6 15
PDB header:transcription
Chain: A: PDB Molecule:fructose transport system repressor frur;
PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida
112c4ru1C_
not modelled 42.6 15
PDB header:transport protein
Chain: C: PDB Molecule:monosaccharide abc transporter substrate-binding protein,
PDBTitle: crystal structure of carbohydrate transporter acei_1806 from2 acidothermus cellulolyticus 11b, target efi-510965, in complex with3 myo-inositol
113c6bsvB_
not modelled 42.3 16
PDB header:transferase
Chain: B: PDB Molecule:xyloglucan 6-xylosyltransferase 1;
PDBTitle: crystal structure of xyloglucan xylosyltransferase binary form
114c3ctpB_
not modelled 42.0 7
PDB header:transcription regulator
Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose
115c3mizB_
not modelled 41.0 15
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator protein, laci
PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli
116d1w3ia_
not modelled 40.4 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
117d1dbqa_
not modelled 40.3 8
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
118c3c3kA_
not modelled 40.2 17
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes
119c4wutA_
not modelled 39.9 8
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate binding protein (ribose);
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220)3 with bound d-fucose
120c2ioyB_
not modelled 39.6 12
PDB header:sugar binding protein
Chain: B: PDB Molecule:periplasmic sugar-binding protein;
PDBTitle: crystal structure of thermoanaerobacter tengcongensis ribose binding2 protein

Binding site prediction 

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