Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1417_(-)_1592156_1592620
DateWed Jul 31 22:05:52 BST 2019
Unique Job IDe2cac915b571de47
SequenceVTAAPNDWDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.167 Y:26.850 Z:31.993
Model (left) based on template d1ef1a2
Top template information
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
Confidence and coverage
Confidence: 47.9% Coverage: 29%
44 residues ( 29% of your sequence) have been modelled with 47.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ef1a2



47.9 20
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
2d1gg3a2



39.6 26
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
3d1e5wa2



38.4 18
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
4d1j19a2



36.7 18
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
5d1isna2



34.2 14
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
6c1e5wA_



31.7 18
PDB header:membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: structure of isolated ferm domain and first long helix of moesin
7d3bzka5



26.8 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
8c6adqP_



23.7 18
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
9d1iwga2



20.9 20
Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
10c2kl4A_



18.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2032 protein;
PDBTitle: nmr structure of the protein nb7804a
11c2i1jA_



17.1 26
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution
12d1h4ra2



15.9 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
13c4gioA_



15.4 9
PDB header:unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of campylobacter jejuni cj0090
14c6ijjK_



12.2 36
PDB header:membrane protein
Chain: K: PDB Molecule:psak;
PDBTitle: photosystem i of chlamydomonas reinhardtii
15c6d2qA_



11.9 27
PDB header:signaling protein
Chain: A: PDB Molecule:ferm, rhogef (arhgef) and pleckstrin domain protein 1
PDBTitle: crystal structure of the ferm domain of zebrafish farp1
16c6igzK_



11.7 24
PDB header:plant protein
Chain: K: PDB Molecule:psak;
PDBTitle: structure of psi-lhci
17d2zpya2



11.6 20
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
18c2i1kA_



10.8 27
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda reveals the coiled-coil domain at2 3.0 angstrom resolution
19c6odih_



10.3 24
PDB header:translocase
Chain: H: PDB Molecule:
PDBTitle: structure of cagy from a cryo-em reconstruction of a t4ss
20c5n76C_



9.8 22
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
21c3u8zD_



not modelled 8.4 17
PDB header:signaling protein
Chain: D: PDB Molecule:merlin;
PDBTitle: human merlin ferm domain
22c6ijoG_



not modelled 8.1 36
PDB header:photosynthesis
Chain: G: PDB Molecule:psag;
PDBTitle: photosystem i of chlamydomonas reinhardtii
23d2gf3a2



not modelled 7.8 20
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:D-aminoacid oxidase-like
24c3nqnB_



not modelled 7.7 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function. (dr_2006) from2 deinococcus radiodurans at 1.88 a resolution
25c2emtB_



not modelled 7.7 20
PDB header:cell adhesion
Chain: B: PDB Molecule:radixin;
PDBTitle: crystal structure analysis of the radixin ferm domain complexed with2 adhesion molecule psgl-1
26c3lw5K_



not modelled 6.0 30
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit x psak;
PDBTitle: improved model of plant photosystem i
27c3uc0B_



not modelled 6.0 38
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope protein;
PDBTitle: crystal structure of domain i of the envelope glycoprotein ectodomain2 from dengue virus serotype 4 in complex with the fab fragment of the3 chimpanzee monoclonal antibody 5h2
28c2mckA_



not modelled 5.7 39
PDB header:hydrolase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus cr6 ns1/2 protein
29c5xu1A_



not modelled 5.5 16
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
30d1ei5a2



not modelled 5.4 36
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below