Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1431_(-)_1608089_1609858
DateWed Jul 31 22:05:54 BST 2019
Unique Job ID6f47f2552738af1c
SequenceMGFLKPDLPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.835 Y:40.376 Z:60.397
Model (left) based on template d2r6gf1
Top template information
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
Confidence and coverage
Confidence: 58.5% Coverage: 11%
66 residues ( 11% of your sequence) have been modelled with 58.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gf1



58.5 12
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
2d1fo1a2



40.0 24
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
3c3hi2C_



35.9 24
PDB header:dna binding protein/toxin
Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit);
PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022)
4c3lzkC_



34.3 20
PDB header:hydrolase
Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein;
PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021
5c2l6pA_



32.6 15
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
6d1kpta_



32.1 16
Fold:Yeast killer toxins
Superfamily:Yeast killer toxins
Family:Virally encoded KP4 toxin
7d1b4ra_



28.8 67
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
8c2hjjA_



28.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ykff;
PDBTitle: solution nmr structure of protein ykff from escherichia coli.2 northeast structural genomics target er397.
9d2hjja1



28.1 25
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YkfF-like
10c5jpqi_



25.9 20
PDB header:ribosome
Chain: I: PDB Molecule:u3 small nucleolar rna-associated protein 21;
PDBTitle: cryo-em structure of the 90s pre-ribosome
11c2l6nA_



24.2 22
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
12c2ifoA_



24.1 10
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme
13d1tisa_



22.7 18
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
14c2zpaB_



22.3 16
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein ypfi;
PDBTitle: crystal structure of trna(met) cytidine acetyltransferase
15c2xu9A_



22.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: crystal structure of laccase from thermus thermophilus hb27
16d1wgoa_



21.6 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
17c3iynR_



20.4 44
PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
18c6rdf7_



19.9 46
PDB header:proton transport
Chain: 7: PDB Molecule:mitochondrial atp synthase associated protein asa7;
PDBTitle: cryoem structure of polytomella f-atp synthase, primary rotary state2 3, monomer-masked refinement
19c1x27F_



19.5 23
PDB header:signaling protein
Chain: F: PDB Molecule:proto-oncogene tyrosine-protein kinase lck;
PDBTitle: crystal structure of lck sh2-sh3 with sh2 binding site of2 p130cas
20c2vldA_



19.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi
21c3iynQ_



not modelled 18.7 44
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
22d1c0pa1



not modelled 18.0 13
Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
23c3gzrA_



not modelled 16.7 25
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
24c4nc6A_



not modelled 16.6 16
PDB header:hydrolase activator
Chain: A: PDB Molecule:rab gtpase-activating protein 1;
PDBTitle: tbc domain of human rab gtpase-activating protein 1
25c4xedA_



not modelled 16.6 33
PDB header:protein binding
Chain: A: PDB Molecule:peptidase m14, carboxypeptidase a;
PDBTitle: pkd domain of m14-like peptidase from thermoplasmatales archaeon scgc2 ab-540-f20
26c3luuA_



not modelled 16.0 26
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
27c4l9dB_



not modelled 15.2 67
PDB header:cell adhesion
Chain: B: PDB Molecule:protease;
PDBTitle: crystal structure of the pkd1 domain from vibrio cholerae2 metalloprotease prtv
28d1l0qa1



not modelled 15.0 67
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
29c5ubdB_



not modelled 14.8 50
PDB header:dna binding protein
Chain: B: PDB Molecule:rctb replication initiator protein;
PDBTitle: crystal structure of the n-terminal domain (domain 1) of rctb, rctb-1-2 124-l48m
30c1avoA_



not modelled 14.5 46
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
31d1vkwa_



not modelled 14.4 71
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:Putative nitroreductase TM1586
32c2wsfF_



not modelled 14.3 53
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit iii, chloroplastic;
PDBTitle: improved model of plant photosystem i
33c4kp3C_



not modelled 13.5 15
PDB header:motor protein/protein transport
Chain: C: PDB Molecule:rilp-like protein 2;
PDBTitle: crystal structure of myova-gtd in complex with two cargos
34c4z9nB_



not modelled 13.4 23
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: abc transporter / periplasmic binding protein from brucella ovis with2 glutathione bound
35d1c3ha_



not modelled 13.2 29
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
36c5hbaA_



not modelled 12.9 23
PDB header:immune system
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: globular domain of zebrafish complement 1qa protein
37c5tvfF_



not modelled 12.5 18
PDB header:lyase
Chain: F: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme-like,
PDBTitle: crystal structure of trypanosoma brucei adometdc/prozyme heterodimer2 in complex with inhibitor cgp 40215
38d1j2jb_



not modelled 12.5 39
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
39c3oakD_



not modelled 12.3 80
PDB header:transcription
Chain: D: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex
40c6aemB_



not modelled 12.2 67
PDB header:unknown function
Chain: B: PDB Molecule:pkd domain;
PDBTitle: crystal structure of the pkd1 domain of vibrio anguillarum epp
41d1oz9a_



not modelled 12.2 22
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
42c3oakC_



not modelled 11.8 80
PDB header:transcription
Chain: C: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex
43c3nhnA_



not modelled 11.8 26
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase hck;
PDBTitle: crystal structure of the src-family kinase hck sh3-sh2-linker2 regulatory region
44d1pk6c_



not modelled 11.7 24
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
45d1f28a_



not modelled 11.7 16
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
46c2l73A_



not modelled 11.6 17
PDB header:oxidoreductase regulator
Chain: A: PDB Molecule:nadph oxidase organizer 1;
PDBTitle: structure of the noxo1b px domain
47d1rgoa2



not modelled 11.6 33
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
48c4whnB_



not modelled 11.5 16
PDB header:transferase
Chain: B: PDB Molecule:apxc;
PDBTitle: structure of toxin-activating acyltransferase (taat)
49c5xywD_



not modelled 11.4 71
PDB header:protein binding
Chain: D: PDB Molecule:gd21652;
PDBTitle: crystal structure of drosophila simulans rhino chromoshadow domain in2 complex with n-terminal domain
50c2wltA_



not modelled 11.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase at 1.4 a2 resolution
51d1pj3a2



not modelled 11.0 18
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
52d1dula_



not modelled 10.9 17
Fold:Signal peptide-binding domain
Superfamily:Signal peptide-binding domain
Family:Signal peptide-binding domain
53d1gq2a2



not modelled 10.9 18
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
54c4kt0F_



not modelled 10.8 47
PDB header:electron transport
Chain: F: PDB Molecule:photosystem i subunit iii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
55c3cu7A_



not modelled 10.8 18
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5
56c4agyA_



not modelled 10.8 25
PDB header:virus
Chain: A: PDB Molecule:vp1 protein;
PDBTitle: coxsackievirus a7 (cav7) empty capsid reconstruction at 6.092 angstrom resolution.
57c2o01F_



not modelled 10.7 53
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit iii, chloroplast;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
58d1hyoa2



not modelled 10.7 18
Fold:FAH
Superfamily:FAH
Family:FAH
59c5kc5A_



not modelled 10.7 19
PDB header:signaling protein
Chain: A: PDB Molecule:cerebellin-1;
PDBTitle: crystal structure of the cbln1 c1q domain trimer
60d1j3kc_



not modelled 10.7 22
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
61c4umoB_



not modelled 10.6 18
PDB header:signaling protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1;
PDBTitle: crystal structure of the kv7.1 proximal c-terminal domain in complex2 with calmodulin
62c5gkeB_



not modelled 10.4 24
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
63c4oumA_



not modelled 10.3 29
PDB header:signaling protein
Chain: A: PDB Molecule:caprin-2;
PDBTitle: crystal structure of human caprin-2 c1q domain
64c3ix6B_



not modelled 10.2 21
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase thya from brucella2 melitensis
65c3chxE_



not modelled 10.2 13
PDB header:membrane protein
Chain: E: PDB Molecule:pmob;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
66d1jb0f_



not modelled 10.0 40
Fold:Single transmembrane helix
Superfamily:Subunit III of photosystem I reaction centre, PsaF
Family:Subunit III of photosystem I reaction centre, PsaF
67c2mc3A_



not modelled 9.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:mus81 endonuclease homolog (yeast), isoform cra_b;
PDBTitle: nmr solution structure of the winged-helix domain from mus812 structure-specific endonuclease
68c4i19A_



not modelled 9.8 9
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: the crystal structure of an epoxide hydrolase from streptomyces2 carzinostaticus subsp. neocarzinostaticus.
69c3j3bG_



not modelled 9.7 50
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
70d2o3bb1



not modelled 9.6 25
Fold:Nuclease A inhibitor (NuiA)
Superfamily:Nuclease A inhibitor (NuiA)
Family:Nuclease A inhibitor (NuiA)
71c2ka3C_



not modelled 9.6 33
PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
72c4d7yA_



not modelled 9.6 24
PDB header:signaling protein
Chain: A: PDB Molecule:c1q-related factor;
PDBTitle: crystal structure of mouse c1ql1 globular domain
73d1b5ea_



not modelled 9.6 16
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
74c6nfqC_



not modelled 9.4 13
PDB header:metal binding protein
Chain: C: PDB Molecule:copc;
PDBTitle: copc from pseudomonas fluorescens
75d1o0sa2



not modelled 9.3 18
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
76c1hyoB_



not modelled 9.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:fumarylacetoacetate hydrolase;
PDBTitle: crystal structure of fumarylacetoacetate hydrolase2 complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic3 acid
77c6fosF_



not modelled 9.2 40
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit ii;
PDBTitle: cyanidioschyzon merolae photosystem i
78c4ohqB_



not modelled 9.2 17
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase, chloroplastic;
PDBTitle: crystal structure of chloroplast triose phosphate isomerase from2 arabidopsis thaliana
79c4a1eF_



not modelled 9.2 44
PDB header:ribosome
Chain: F: PDB Molecule:rpl7a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
80d1qm4a3



not modelled 9.1 16
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
81c1yewI_



not modelled 9.0 20
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
82c3rgbA_



not modelled 9.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
83c4ediC_



not modelled 8.9 32
PDB header:transport protein
Chain: C: PDB Molecule:ethanolamine utilization protein;
PDBTitle: disulfide bonded eutl from clostridium perfringens
84c2q74B_



not modelled 8.9 24
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: mycobacterium tuberculosis suhb
85d2p02a3



not modelled 8.8 16
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
86d2bp3a1



not modelled 8.8 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87c4f3jA_



not modelled 8.7 23
PDB header:signaling protein
Chain: A: PDB Molecule:complement c1q tumor necrosis factor-related protein 5;
PDBTitle: crystal structure of trimeric gc1q domain of human c1qtnf5 associated2 with late-onset retinal macular degeneration
88c2kzwA_



not modelled 8.6 67
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a
89d1pk6a_



not modelled 8.6 24
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
90c3rfrI_



not modelled 8.6 13
PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
91c1l0qC_



not modelled 8.4 67
PDB header:protein binding
Chain: C: PDB Molecule:surface layer protein;
PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
92d1u5la_



not modelled 8.4 36
Fold:Prion-like
Superfamily:Prion-like
Family:Prion-like
93d1fngb2



not modelled 8.3 24
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
94d1ttja_



not modelled 8.3 17
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
95d3c7ba2



not modelled 8.3 19
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
96d1vhib_



not modelled 8.3 26
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
97d1mxaa3



not modelled 8.3 23
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
98c3b89A_



not modelled 8.3 35
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: crystal structure of rrna methylase from escherichia coli
99c4esjA_



not modelled 8.3 31
PDB header:hydrolase/dna
Chain: A: PDB Molecule:type-2 restriction enzyme dpni;
PDBTitle: restriction endonuclease dpni in complex with target dna

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below