Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1437_(pgk)_1614335_1615573
DateWed Jul 31 22:05:54 BST 2019
Unique Job ID67815a19eebd72f5
SequenceMSVANLKDLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.058 Y:48.308 Z:74.557
Model (left) based on template d1phpa_
Top template information
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
Confidence and coverage
Confidence:100.0% Coverage: 95%
391 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1phpa_



100.0 44
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
2d1vpea_



100.0 47
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
3c4dg5A_



100.0 42
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of staphylococcal phosphoglycerate kinase
4c3zlbA_



100.0 44
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of phosphoglycerate kinase from streptococcus2 pneumoniae
5c3q3vA_



100.0 42
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni.
6d16pka_



100.0 41
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
7d1v6sa_



100.0 49
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
8d1vjda_



100.0 39
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
9d1qpga_



100.0 38
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
10c5bt8D_



100.0 42
PDB header:transferase
Chain: D: PDB Molecule:phosphoglycerate kinase;
PDBTitle: x-ray crystal structure of phosphoglycerate kinase from acinetobacter2 baumannii
11d1ltka_



100.0 37
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
12c2cunA_



100.0 32
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3
13c4ng4B_



100.0 39
PDB header:transferase
Chain: B: PDB Molecule:phosphoglycerate kinase;
PDBTitle: structure of phosphoglycerate kinase (cbu_1782) from coxiella burnetii
14c1zmrA_



100.0 41
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of the e. coli phosphoglycerate kinase
15d1hdia_



100.0 38
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
16c4ehjA_



100.0 41
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: an x-ray structure of a putative phosphogylcerate kinase from2 francisella tularensis subsp. tularensis schu s4
17d1fw8a_



100.0 38
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
18c3zvmA_



89.1 22
PDB header:hydrolase/transferase/dna
Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase;
PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase
19d1yj5a1



88.5 21
Fold:HAD-like
Superfamily:HAD-like
Family:phosphatase domain of polynucleotide kinase
20c1yj5B_



87.3 19
PDB header:transferase
Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain;
PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
21c3rfoA_



not modelled 72.0 22
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis
22c3ek5A_



not modelled 67.7 19
PDB header:transferase
Chain: A: PDB Molecule:uridylate kinase;
PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium
23d2pjua1



not modelled 66.5 14
Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
24c3uagA_



not modelled 62.8 12
PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
25c3kc2A_



not modelled 61.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ykr070w;
PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae
26d1ybda1



not modelled 61.8 10
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
27c2pjuD_



not modelled 61.6 14
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
28c5uaiA_



not modelled 54.8 22
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methionyl-trna formyltransferase from pseudomonas2 aeruginosa
29c5ajtA_



not modelled 51.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:phosphoribohydrolase lonely guy;
PDBTitle: crystal structure of ligand-free phosphoribohydrolase lonely guy from2 claviceps purpurea
30c3obaA_



not modelled 50.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
31c2j5tF_



not modelled 50.3 13
PDB header:transferase
Chain: F: PDB Molecule:glutamate 5-kinase;
PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate
32c2wdfA_



not modelled 48.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:sulfur oxidation protein soxb;
PDBTitle: termus thermophilus sulfate thiohydrolase soxb
33c4zexA_



not modelled 43.8 28
PDB header:unknown function
Chain: A: PDB Molecule:pfhad1;
PDBTitle: crystal structure of pfhad1 in complex with glyceraldehyde-3-phosphate
34c4jyrG_



not modelled 41.8 20
PDB header:hydrolase
Chain: G: PDB Molecule:d,d-heptose 1,7-bisphosphate phosphatase;
PDBTitle: crystal structure of d,d-heptose 1,7-bisphosphate phosphatase from2 burkholderia thailandensis
35d2b30a1



not modelled 41.4 22
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
36d2a1fa1



not modelled 39.2 22
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
37d1kfia1



not modelled 38.1 15
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
38c5ykaA_



not modelled 37.0 26
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein kdoo;
PDBTitle: crystal structure of the kdo hydroxylase kdoo, a non-heme fe(ii)2 alphaketoglutarate dependent dioxygenase in complex with cobalt(ii)
39c3n5lA_



not modelled 34.3 17
PDB header:transport protein
Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter;
PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution
40c4zkjA_



not modelled 33.5 15
PDB header:unknown function
Chain: A: PDB Molecule:crispr-associated protein cas1;
PDBTitle: crystal structure of crispr-associated protein
41c2yybA_



not modelled 33.3 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1606;
PDBTitle: crystal structure of ttha1606 from thermus thermophilus hb8
42c2i55C_



not modelled 33.3 26
PDB header:isomerase
Chain: C: PDB Molecule:phosphomannomutase;
PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana
43c2va1A_



not modelled 33.2 13
PDB header:transferase
Chain: A: PDB Molecule:uridylate kinase;
PDBTitle: crystal structure of ump kinase from ureaplasma parvum
44d1rkqa_



not modelled 31.6 33
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
45c4rapD_



not modelled 30.1 22
PDB header:transferase
Chain: D: PDB Molecule:glycosyltransferase tibc;
PDBTitle: crystal structure of bacterial iron-containing dodecameric2 glycosyltransferase tibc from enterotoxigenic e.coli h10407
46d1dkua2



not modelled 29.9 21
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
47d2btya1



not modelled 29.2 10
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:N-acetyl-l-glutamate kinase
48d1z9da1



not modelled 28.1 14
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
49c5xvnL_



not modelled 28.0 18
PDB header:immune system
Chain: L: PDB Molecule:crispr-associated endonuclease cas1;
PDBTitle: e. far cas1-cas2/prespacer binary complex
50d2ji7a1



not modelled 27.8 18
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
51d2z1aa2



not modelled 27.4 32
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
52d1mv8a3



not modelled 27.3 16
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
53c3r4cA_



not modelled 27.2 36
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like hydrolase;
PDBTitle: divergence of structure and function among phosphatases of the2 haloalkanoate (had) enzyme superfamily: analysis of bt1666 from3 bacteroides thetaiotaomicron
54c3p7iA_



not modelled 26.7 17
PDB header:transport protein
Chain: A: PDB Molecule:phnd, subunit of alkylphosphonate abc transporter;
PDBTitle: crystal structure of escherichia coli phnd in complex with 2-2 aminoethyl phosphonate
55c4qjbB_



not modelled 26.4 31
PDB header:hydrolase
Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of the sugar phosphatase pfhad1 from plasmodium2 falciparum
56d1wzca1



not modelled 26.1 17
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
57c2e9yA_



not modelled 25.9 11
PDB header:transferase
Chain: A: PDB Molecule:carbamate kinase;
PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1
58c2ohoA_



not modelled 25.6 22
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: structural basis for glutamate racemase inhibitor
59c6hz4B_



not modelled 25.3 26
PDB header:dna binding protein
Chain: B: PDB Molecule:5-methylcytosine-specific restriction enzyme b;
PDBTitle: structure of mcrbc without dna binding domains (one half of the full2 complex)
60d1sm4a2



not modelled 25.2 4
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
61d1vhna_



not modelled 25.1 17
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
62c1pklB_



not modelled 25.0 13
PDB header:transferase
Chain: B: PDB Molecule:protein (pyruvate kinase);
PDBTitle: the structure of leishmania pyruvate kinase
63d1xpja_



not modelled 24.9 8
Fold:HAD-like
Superfamily:HAD-like
Family:Hypothetical protein VC0232
64c4a7xF_



not modelled 24.7 20
PDB header:transferase
Chain: F: PDB Molecule:uridylate kinase;
PDBTitle: crystal structure of uridylate kinase from helicobacter pylori
65c2kxhB_



not modelled 24.6 33
PDB header:protein binding
Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1;
PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide
66d1c8ba_



not modelled 24.6 19
Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Germination protease
67c2iz6A_



not modelled 24.2 23
PDB header:metal transport
Chain: A: PDB Molecule:molybdenum cofactor carrier protein;
PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein
68c3prjB_



not modelled 24.1 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase.
69c5fclD_



not modelled 23.8 15
PDB header:dna binding protein
Chain: D: PDB Molecule:crispr-associated endonuclease cas1;
PDBTitle: crystal structure of cas1 from pectobacterium atrosepticum
70d1krha2



not modelled 23.7 23
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
71d1vh0a_



not modelled 23.4 17
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
72c3nkdB_



not modelled 23.4 15
PDB header:immune system
Chain: B: PDB Molecule:crispr-associated protein cas1;
PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12
73d2bmwa2



not modelled 23.1 7
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
74d2obba1



not modelled 22.9 23
Fold:HAD-like
Superfamily:HAD-like
Family:BT0820-like
75c5htxA_



not modelled 22.8 24
PDB header:transferase
Chain: A: PDB Molecule:putative xylulose kinase;
PDBTitle: putative sugar kinases from arabidopsis thaliana in complex with adp
76d1h5ya_



not modelled 22.8 15
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
77c3zupB_



not modelled 22.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:mannosyl-3-phosphoglycerate phosphatase;
PDBTitle: the 3-dimensional structure of mpgp from thermus2 thermophilus hb27, in complex with the alpha-3 mannosylglycerate and orthophosphate reaction products.
78c5dmnA_



not modelled 22.7 22
PDB header:transferase
Chain: A: PDB Molecule:homocysteine s-methyltransferase;
PDBTitle: crystal structure of the homocysteine methyltransferase mmum from2 escherichia coli, apo form
79c5zbjA_



not modelled 22.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytokinin riboside 5'-monophosphate
PDBTitle: crystal strcuture of type-i log from pseudomonas aeruginosa pao1
80c5ynlA_



not modelled 22.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:arginase;
PDBTitle: crystal structure of a cold-adapted arginase from psychrophilic yeast,2 glaciozyma antarctica
81c3jyfB_



not modelled 22.3 24
PDB header:hydrolase
Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-
PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578
82c4edfC_



not modelled 22.3 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: dimeric hugdh, k94e
83d2b8ea1



not modelled 22.3 19
Fold:HAD-like
Superfamily:HAD-like
Family:Meta-cation ATPase, catalytic domain P
84c1zdrB_



not modelled 22.3 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrofolate reductase;
PDBTitle: dhfr from bacillus stearothermophilus
85c2ek8A_



not modelled 22.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase;
PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1
86c3t07D_



not modelled 21.9 13
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
87c4pu6A_



not modelled 21.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with k+ cations
88c2vx6A_



not modelled 21.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:cellvibrio japonicus mannanase cjman26c;
PDBTitle: cellvibrio japonicus mannanase cjman26c gal1man4-bound form
89c3dg8B_



not modelled 21.3 29
PDB header:oxidoreductase, transferase
Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase;
PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium falciparum2 dihydrofolate reductase-thymidylate synthase (pfdhfr-ts) complexed3 with rjf670, nadph, and dump
90c6igmH_



not modelled 21.0 19
PDB header:transcription
Chain: H: PDB Molecule:helicase srcap;
PDBTitle: cryo-em structure of human srcap complex
91c4f4fB_



not modelled 20.9 17
PDB header:lyase
Chain: B: PDB Molecule:threonine synthase;
PDBTitle: x-ray crystal structure of plp bound threonine synthase from brucella2 melitensis
92c3dnpA_



not modelled 20.7 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:stress response protein yhax;
PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis
93c3gveB_



not modelled 20.2 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yfkn protein;
PDBTitle: crystal structure of calcineurin-like phosphoesterase yfkn from2 bacillus subtilis
94d1gawa2



not modelled 20.2 3
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
95c3g7uA_



not modelled 19.9 12
PDB header:transferase
Chain: A: PDB Molecule:cytosine-specific methyltransferase;
PDBTitle: crystal structure of putative dna modification methyltransferase2 encoded within prophage cp-933r (e.coli)
96d1vb3a1



not modelled 19.7 29
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
97d1p3da2



not modelled 19.7 10
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
98c5wqlC_



not modelled 19.6 24
PDB header:protein binding/signaling protein/hydrol
Chain: C: PDB Molecule:tail-specific protease;
PDBTitle: structure of a pdz-protease bound to a substrate-binding adaptor
99d1tr9a_



not modelled 19.6 23
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like

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