Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1446c_(opcA)_1624460_1625371
DateFri Aug 2 13:30:02 BST 2019
Unique Job ID42a27cfbeecc8b92
SequenceMIVDLPDTTT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.301 Y:41.931 Z:65.715
Model (left) based on template d1kl7a_
Top template information
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Confidence and coverage
Confidence: 77.0% Coverage: 36%
109 residues ( 36% of your sequence) have been modelled with 77.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1kl7a_



77.0 16
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
2d1miua4



24.5 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
3c6ojmB_



22.3 15
PDB header:lyase
Chain: B: PDB Molecule:1,4-dihydroxy-2-naphthoyl-coa synthase;
PDBTitle: crystal structure of 1,4-dihydroxy-2-naphthoyl-coa synthase2 elizabethkingia anophelis nuhp1
4c3k12F_



21.9 17
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:uncharacterized protein a6v7t0;
PDBTitle: crystal structure of an uncharacterized protein a6v7t0 from2 pseudomonas aeruginosa
5c1r0lD_



19.8 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from zymomonas mobilis2 in complex with nadph
6d1rm6a2



19.0 22
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
7d1dgja4



17.3 12
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
8d1ohua_



16.7 8
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
9d1vb3a1



16.0 30
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
10c4f4fB_



14.7 19
PDB header:lyase
Chain: B: PDB Molecule:threonine synthase;
PDBTitle: x-ray crystal structure of plp bound threonine synthase from brucella2 melitensis
11d1ffgb_



14.2 26
Fold:Ferredoxin-like
Superfamily:CheY-binding domain of CheA
Family:CheY-binding domain of CheA
12d1iyjb4



13.5 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
13d1nyed_



13.5 11
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
14c5bvlA_



13.4 37
PDB header:de novo protein
Chain: A: PDB Molecule:designed tim barrel stim11;
PDBTitle: crystal structure of a de novo designed tim-barrel
15c3ossD_



12.6 13
PDB header:protein transport
Chain: D: PDB Molecule:type 2 secretion system, secretin gspd;
PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system
16d1efpb_



12.4 21
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
17c3hrdE_



11.9 22
PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
18c3v7nA_



11.7 15
PDB header:lyase
Chain: A: PDB Molecule:threonine synthase;
PDBTitle: crystal structure of threonine synthase (thrc) from from burkholderia2 thailandensis
19c1o94D_



11.7 17
PDB header:electron transport
Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit;
PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein
20c5vldC_



11.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:histidinol dehydrogenase, chloroplastic;
PDBTitle: crystal structure of medicago truncatula l-histidinol dehydrogenase in2 complex with l-histidine and nad+
21c6jo52_



not modelled 10.3 38
PDB header:photosynthesis
Chain: 2: PDB Molecule:chlorophyll a-b binding protein, chloroplastic;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
22c6fahB_



not modelled 10.2 12
PDB header:flavoprotein
Chain: B: PDB Molecule:caffeyl-coa reductase-etf complex subunit card;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
23d1o94c_



not modelled 10.0 20
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
24c6ijj7_



not modelled 9.9 24
PDB header:membrane protein
Chain: 7: PDB Molecule:lhca7;
PDBTitle: photosystem i of chlamydomonas reinhardtii
25d1yt3a1



not modelled 9.8 18
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
26c2ma1A_



not modelled 9.4 18
PDB header:dna binding protein
Chain: A: PDB Molecule:dna helicase recq;
PDBTitle: solution structure of hrdc1 domain of recq helicase from deinococcus2 radiodurans
27c2yonA_



not modelled 9.2 22
PDB header:signaling protein
Chain: A: PDB Molecule:sensory box protein;
PDBTitle: solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida
28d3clsc1



not modelled 9.1 15
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
29d1wuda1



not modelled 9.0 11
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
30d2hbka1



not modelled 8.8 24
Fold:SAM domain-like
Superfamily:HRDC-like
Family:EXOSC10 HRDC domain-like
31c6igz4_



not modelled 8.6 30
PDB header:plant protein
Chain: 4: PDB Molecule:lhca-b;
PDBTitle: structure of psi-lhci
32d7reqb2



not modelled 8.5 11
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
33c6igz2_



not modelled 8.3 26
PDB header:plant protein
Chain: 2: PDB Molecule:lhca-c;
PDBTitle: structure of psi-lhci
34d1n62b2



not modelled 8.1 16
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
35d1t3qb2



not modelled 7.9 24
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
36d1vm6a2



not modelled 7.9 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
37c2z8nB_



not modelled 7.8 21
PDB header:lyase
Chain: B: PDB Molecule:27.5 kda virulence protein;
PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase
38c5f2yF_



not modelled 7.8 18
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
39c5f2yB_



not modelled 7.7 18
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
40c6nt5B_



not modelled 7.6 29
PDB header:immune system
Chain: B: PDB Molecule:stimulator of interferon protein;
PDBTitle: cryo-em structure of full-length human sting in the apo state
41d1vlba4



not modelled 7.6 16
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
42c1t3qB_



not modelled 7.6 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
43c1vm6B_



not modelled 7.5 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase (tm1520) from2 thermotoga maritima at 2.27 a resolution
44c4lvnP_



not modelled 7.4 31
PDB header:hydrolase/inhibitor/immune system
Chain: P: PDB Molecule:subtilisin-like serine protease;
PDBTitle: crystal structure of pfsub1-prodomain-nimp.m7 fab complex
45d1e8ya2



not modelled 7.3 10
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
46c5ezeB_



not modelled 7.3 21
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
47d1u9pa1



not modelled 7.2 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
48c4v1ag_



not modelled 7.2 9
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
49d1qbjc_



not modelled 7.1 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
50c2jsxA_



not modelled 7.0 18
PDB header:chaperone
Chain: A: PDB Molecule:protein napd;
PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd
51c3kjjL_



not modelled 7.0 19
PDB header:unknown function
Chain: L: PDB Molecule:nmb1025 protein;
PDBTitle: crystal structure of nmb1025, a member of yjgf protein family, from2 neisseria meningitidis (hexagonal crystal form)
52c3clrD_



not modelled 6.9 17
PDB header:electron transport
Chain: D: PDB Molecule:electron transfer flavoprotein subunit alpha;
PDBTitle: crystal structure of the r236a etf mutant from m. methylotrophus
53d1qu9a_



not modelled 6.9 13
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
54c6igz9_



not modelled 6.8 19
PDB header:plant protein
Chain: 9: PDB Molecule:lhca-i;
PDBTitle: structure of psi-lhci
55c5f2yE_



not modelled 6.7 21
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
56c5ezeC_



not modelled 6.7 21
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
57c5ezeE_



not modelled 6.7 21
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
58d1vr8a1



not modelled 6.7 18
Fold:TM1622-like
Superfamily:TM1622-like
Family:TM1622-like
59c3lf9A_



not modelled 6.6 21
PDB header:immune system
Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161);
PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c
60c5f2yG_



not modelled 6.5 21
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
61c5ezeA_



not modelled 6.5 21
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
62c5ezeF_



not modelled 6.5 21
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
63c5f2yA_



not modelled 6.5 21
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
64d1qgpa_



not modelled 6.5 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
65c3gtzA_



not modelled 6.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative translation initiation inhibitor;
PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium
66c1vw44_



not modelled 6.3 22
PDB header:ribosome
Chain: 4: PDB Molecule:54s ribosomal protein l51, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
67d2g64a1



not modelled 6.2 10
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:6-pyruvoyl tetrahydropterin synthase
68c6igz6_



not modelled 6.0 26
PDB header:plant protein
Chain: 6: PDB Molecule:lhca-g;
PDBTitle: structure of psi-lhci
69c5ezeG_



not modelled 6.0 21
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
70c6ijo9_



not modelled 6.0 26
PDB header:photosynthesis
Chain: 9: PDB Molecule:lhca9;
PDBTitle: photosystem i of chlamydomonas reinhardtii
71d2gxba1



not modelled 6.0 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
72c5f2yC_



not modelled 5.9 18
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
73d1rrqa1



not modelled 5.9 18
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
74c3e0zB_



not modelled 5.8 13
PDB header:unknown function
Chain: B: PDB Molecule:protein of unknown function;
PDBTitle: crystal structure of a putative imidazole glycerol phosphate synthase2 homolog (eubrec_1070) from eubacterium rectale at 1.75 a resolution
75d1myka_



not modelled 5.7 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
76c5f2yD_



not modelled 5.7 21
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
77d2ex3b1



not modelled 5.7 32
Fold:DNA terminal protein
Superfamily:DNA terminal protein
Family:DNA terminal protein
78d1efvb_



not modelled 5.6 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
79d1baza_



not modelled 5.5 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
80c6igz0_



not modelled 5.5 15
PDB header:plant protein
Chain: 0: PDB Molecule:lhca-j;
PDBTitle: structure of psi-lhci
81d1e7ua2



not modelled 5.4 10
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
82c2ex3B_



not modelled 5.4 32
PDB header:transferase/replication
Chain: B: PDB Molecule:dna terminal protein;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
83c2ex3D_



not modelled 5.4 32
PDB header:transferase/replication
Chain: D: PDB Molecule:dna terminal protein;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
84c2ex3J_



not modelled 5.4 32
PDB header:transferase/replication
Chain: J: PDB Molecule:dna terminal protein;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
85c2ex3F_



not modelled 5.4 32
PDB header:transferase/replication
Chain: F: PDB Molecule:dna terminal protein;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
86c2ex3L_



not modelled 5.4 32
PDB header:transferase/replication
Chain: L: PDB Molecule:dna terminal protein;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
87c2ex3H_



not modelled 5.4 32
PDB header:transferase/replication
Chain: H: PDB Molecule:dna terminal protein;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
88d2e1fa1



not modelled 5.4 15
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
89c1sb3D_



not modelled 5.4 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
90c5ezeD_



not modelled 5.3 21
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
91c2y3yC_



not modelled 5.2 8
PDB header:transcription
Chain: C: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: holo-ni(ii) hpnikr is a symmetric tetramer containing four canonic2 square-planar ni(ii) ions at physiological ph
92c3m8yC_



not modelled 5.1 16
PDB header:isomerase
Chain: C: PDB Molecule:phosphopentomutase;
PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation
93c2bh8B_



not modelled 5.1 25
PDB header:transcription
Chain: B: PDB Molecule:1b11;
PDBTitle: combinatorial protein 1b11
94d1v97a5



not modelled 5.0 15
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
95c3zikA_



not modelled 5.0 14
PDB header:cell cycle
Chain: A: PDB Molecule:wpl1;
PDBTitle: structure of the wpl1 protein
96c5y6qC_



not modelled 5.0 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:aldehyde oxidase large subunit;
PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400

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