Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1456c_(-)_1641499_1642431
DateFri Aug 2 13:30:03 BST 2019
Unique Job IDed8b55a665157508
SequenceVPYDRAVSPS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.320 Y:43.899 Z:61.735
Model (left) based on template c6iedA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
Confidence and coverage
Confidence:100.0% Coverage: 94%
291 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6iedA_



100.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
2c1yp8A_



66.9 33
PDB header:cell cycle
Chain: A: PDB Molecule:tricyclon a;
PDBTitle: solution structure of the cyclotide tricyclon a
3c5oc0A_



65.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b561;
PDBTitle: structure of e. coli superoxide oxidase
4c2wanA_



55.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
5d1nekd_



55.1 16
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
6c1wqbA_



51.7 50
PDB header:toxin
Chain: A: PDB Molecule:aptotoxin vii;
PDBTitle: three-dimensional solution strucutre of aptotoxin vii, from2 the venom of a trap-door spider
7c3ghgD_



47.4 27
PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen alpha chain;
PDBTitle: crystal structure of human fibrinogen
8c2cseW_



45.3 30
PDB header:virus
Chain: W: PDB Molecule:major core protein lambda 1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
9c1k48A_



43.9 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
10c1jjzA_



43.7 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
11c3k1qC_



39.3 19
PDB header:
PDB COMPND:
12c3k1qB_



39.0 19
PDB header:
PDB COMPND:
13c6fo2R_



38.3 46
PDB header:membrane protein
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cryoem structure of bovine cytochrome bc1 with no ligand bound
14d1n1ua_



35.4 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
15c1n1uA_



35.4 33
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
16c2kukA_



32.4 31
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
17d1ma3a_



32.1 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
18c2a45J_



29.2 27
PDB header:hydrolase/hydrolase inhibitor
Chain: J: PDB Molecule:fibrinogen alpha chain;
PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin
19c4ttnA_



28.1 63
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
20c3cwbC_



27.9 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome b;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
21c2khbA_



not modelled 27.9 63
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
22c4ttmA_



not modelled 27.9 63
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
23c1m1jA_



not modelled 27.7 27
PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha subunit;
PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
24c4ttoA_



not modelled 27.3 63
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
25c2f2iA_



not modelled 27.1 29
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
26d1pt4a_



not modelled 26.8 43
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
27d1ppjc2



not modelled 24.5 14
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
28c6dhrA_



not modelled 24.4 40
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
29d2e74a1



not modelled 24.3 14
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
30c1nb1A_



not modelled 23.8 36
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
31d1nb1a_



not modelled 23.8 36
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
32c1orxA_



not modelled 23.7 56
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
33c3e4hA_



not modelled 23.5 31
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
34d1tafa_



not modelled 23.4 33
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
35d1efnb_



not modelled 23.4 50
Fold:Regulatory factor Nef
Superfamily:Regulatory factor Nef
Family:Regulatory factor Nef
36c3ik5A_



not modelled 23.2 50
PDB header:viral protein/signaling protein
Chain: A: PDB Molecule:protein nef;
PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide (a63-r80)
37c2xi1A_



not modelled 23.1 50
PDB header:viral protein
Chain: A: PDB Molecule:nef;
PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample
38c4g7wB_



not modelled 23.0 57
PDB header:protein binding
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of the minor coat protein2 piii from ctxphi
39c2k7gA_



not modelled 22.8 50
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f
40d1mjta_



not modelled 22.7 18
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
41c4g7xA_



not modelled 22.7 57
PDB header:protein binding/protein binding
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a complex between the ctxphi piii n-terminal2 domain and the vibrio cholerae tola c-terminal domain
42c3tb8A_



not modelled 21.6 50
PDB header:apoptosis
Chain: A: PDB Molecule:protein nef;
PDBTitle: crystal structure of full-length myristoylated hiv-1 nef
43c3rbbA_



not modelled 21.2 50
PDB header:viral protein, protein binding
Chain: A: PDB Molecule:protein nef;
PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain
44d1umrc_



not modelled 20.9 57
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
45c2eg9B_



not modelled 20.5 44
PDB header:hydrolase
Chain: B: PDB Molecule:adp-ribosyl cyclase 1;
PDBTitle: crystal structure of the truncated extracellular domain of2 mouse cd38
46d1om4a_



not modelled 20.1 44
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
47c1fooA_



not modelled 20.1 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase;
PDBTitle: bovine endothelial nitric oxide synthase heme domain complexed with l-2 arg and no(h4b-free)
48c2qjkM_



not modelled 19.8 18
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome b;
PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin
49d1q90b_



not modelled 19.7 13
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
50d2nefa_



not modelled 19.1 50
Fold:Regulatory factor Nef
Superfamily:Regulatory factor Nef
Family:Regulatory factor Nef
51d3e7ma1



not modelled 19.0 44
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
52c2mn1A_



not modelled 18.8 50
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
53c3aygA_



not modelled 18.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
54d3e7ga1



not modelled 18.4 48
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
55c2gj0A_



not modelled 18.3 40
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
56d1m7va_



not modelled 18.2 19
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
57c2lamA_



not modelled 16.8 44
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
58c3cx5N_



not modelled 16.3 12
PDB header:oxidoreductase
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: structure of complex iii with bound cytochrome c in reduced state and2 definition of a minimal core interface for electron transfer.
59c2flqA_



not modelled 16.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide synthase;
PDBTitle: crystal structure of nitric oxide synthase from geobacillus2 stearothermophilus (atcc 12980) complexed with l-arginine
60d1kqfc_



not modelled 16.1 10
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Formate dehydrogenase N, cytochrome (gamma) subunit
61d1m9ma_



not modelled 14.9 46
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
62c1q01A_



not modelled 14.1 71
PDB header:blood clotting
Chain: A: PDB Molecule:lebetin 2 isoform alpha;
PDBTitle: lebetin peptides, a new class of potent aggregation2 inhibitors
63c3sbcG_



not modelled 13.8 36
PDB header:oxidoreductase
Chain: G: PDB Molecule:peroxiredoxin tsa1;
PDBTitle: crystal structure of saccharomyces cerevisiae tsa1c47s mutant protein
64c6cfzH_



not modelled 13.3 40
PDB header:nuclear protein
Chain: H: PDB Molecule:dam1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
65c6av8A_



not modelled 13.3 64
PDB header:toxin
Chain: A: PDB Molecule:u5-theraphotoxin-hs1b 1;
PDBTitle: exploring cystine dense peptide space to open a unique molecular2 toolbox
66c2lurA_



not modelled 13.3 63
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
67d1q2oa_



not modelled 13.2 46
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
68d1atxa_



not modelled 13.1 36
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
69c2kncA_



not modelled 13.1 18
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
70c3j6vU_



not modelled 12.7 33
PDB header:ribosome
Chain: U: PDB Molecule:28s ribosomal protein s21, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
71c2nx6A_



not modelled 12.5 36
PDB header:structural protein
Chain: A: PDB Molecule:nematocyst outer wall antigen;
PDBTitle: structure of nowa cysteine rich domain 6
72c5ir6A_



not modelled 12.4 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
73c6elhA_



not modelled 12.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
74d1uhua_



not modelled 12.3 28
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:MMLV matrix protein-like
75c2jwmA_



not modelled 12.3 36
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle
76c1yk1E_



not modelled 12.2 63
PDB header:hormone/growth factor receptor
Chain: E: PDB Molecule:natriuretic peptides b;
PDBTitle: structure of natriuretic peptide receptor-c complexed with brain2 natriuretic peptide
77c2aapA_



not modelled 11.9 64
PDB header:toxin
Chain: A: PDB Molecule:jingzhaotoxin-vii;
PDBTitle: solution structure of jingzhaotoxin-vii
78c6g1cV_



not modelled 11.7 25
PDB header:antitoxin
Chain: V: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the n-terminal domain of burkholderia2 pseudomallei antitoxin hicb
79d1lpba2



not modelled 11.5 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Colipase-like
Family:Colipase-like
80c6hqaF_



not modelled 11.4 17
PDB header:transcription
Chain: F: PDB Molecule:subunit (17 kda) of tfiid and saga complexes, involved in
PDBTitle: molecular structure of promoter-bound yeast tfiid
81c6mzlM_



not modelled 11.4 29
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor tfiid subunit 9, taf9;
PDBTitle: human tfiid canonical state
82d1bhpa_



not modelled 11.3 60
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
83d1mn8a_



not modelled 11.1 22
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:MMLV matrix protein-like
84d1xpaa2



not modelled 10.9 29
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
85d1hhna_



not modelled 10.9 13
Fold:P-domain of calnexin/calreticulin
Superfamily:P-domain of calnexin/calreticulin
Family:P-domain of calnexin/calreticulin
86c2m9oA_



not modelled 10.7 63
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
87c1zuvA_



not modelled 10.3 45
PDB header:antimicrobial protein
Chain: A: PDB Molecule:amaranthus caudatus antimicrobial peptide 2;
PDBTitle: 24 nmr structures of acamp2-like peptide with phenylalanine2 18 mutated to tryptophan
88d1bccc3



not modelled 10.1 18
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
89c1h6wA_



not modelled 9.8 24
PDB header:structural protein
Chain: A: PDB Molecule:bacteriophage t4 short tail fibre;
PDBTitle: crystal structure of a heat- and protease-stable fragment of the2 bacteriophage t4 short fibre
90c5czoC_



not modelled 9.7 7
PDB header:transferase
Chain: C: PDB Molecule:monopolin complex subunit mam1;
PDBTitle: structure of s. cerevisiae hrr25:mam1 complex, form 2
91c2mvhA_



not modelled 9.2 44
PDB header:protein binding
Chain: A: PDB Molecule:stage v sporulation protein m;
PDBTitle: structure determination of stage v sporulation protein m (spovm)
92d1v4lb_



not modelled 8.8 57
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
93c5d5nA_



not modelled 8.7 30
PDB header:viral protein
Chain: A: PDB Molecule:virion egress protein ul34 homolog;
PDBTitle: crystal structure of the human cytomegalovirus pul50-pul53 complex
94c5hvzC_



not modelled 8.7 15
PDB header:transferase
Chain: C: PDB Molecule:small membrane a-kinase anchor protein;
PDBTitle: crystal structure of smakap akb domain bound ria dimerization/docking2 (d/d) complex at 2.0 a resolution
95d1c3ab_



not modelled 8.5 57
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
96c2l8sA_



not modelled 8.2 10
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
97d2ef1a1



not modelled 7.5 36
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:ADP ribosyl cyclase-like
98c2mvjA_



not modelled 7.4 44
PDB header:protein binding
Chain: A: PDB Molecule:stage v sporulation protein m;
PDBTitle: structure of stage v sporulation protein m (spovm) p9a mutant
99c1yk0E_



not modelled 7.4 83
PDB header:hormone/growth factor receptor
Chain: E: PDB Molecule:atrial natriuretic factor;
PDBTitle: structure of natriuretic peptide receptor-c complexed with atrial2 natriuretic peptide

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Transmembrane helix prediction 

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