Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1457c_(-)_1642543_1643328
DateFri Aug 2 13:30:03 BST 2019
Unique Job IDfda20574f1b046ef
SequenceVTQTNRPAFP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.499 Y:50.999 Z:47.329
Model (left) based on template c6an7D_
Top template information
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
Confidence and coverage
Confidence:100.0% Coverage: 88%
230 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6an7D_



100.0 11
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
2c6an7C_



100.0 11
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
3c5nj3B_



99.9 16
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: complete structure
4c5do7B_



99.9 13
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 8;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
5c5do7A_



99.9 13
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family g member 5;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
6c5njgB_



99.9 15
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: part of the structure that could be2 built de novo
7c5xjyA_



98.4 10
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family a member 1;
PDBTitle: cryo-em structure of human abca1
8c1iflA_



61.7 23
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: molecular models and structural comparisons of native and2 mutant class i filamentous bacteriophages ff (fd, f1, m13),3 if1 and ike
9c2jraB_



17.9 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein rpa2121;
PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6
10c2llyA_



15.6 21
PDB header:transport protein
Chain: A: PDB Molecule:neuronal acetylcholine receptor subunit alpha-4;
PDBTitle: nmr structures of the transmembrane domains of the nachr a4 subunit
11c6d6tE_



13.5 19
PDB header:transport protein
Chain: E: PDB Molecule:human gaba-a receptor subunit gamma-2;
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation b
12c3jadC_



10.0 20
PDB header:signaling protein/antagonist
Chain: C: PDB Molecule:glycine receptor subunit alphaz1;
PDBTitle: structure of alpha-1 glycine receptor by single particle electron2 cryo-microscopy, strychnine-bound state
13c3riaC_



6.1 14
PDB header:transport protein/immune system
Chain: C: PDB Molecule:avermectin-sensitive glutamate-gated chloride channel glucl
PDBTitle: c. elegans glutamate-gated chloride channel (glucl) in complex with2 fab, ivermectin and iodide.
14c2m6iC_



6.1 21
PDB header:membrane protein
Chain: C: PDB Molecule:full-length transmembrane domains of human glycine receptor
PDBTitle: putative pentameric open-channel structure of full-length2 transmembrane domains of human glycine receptor alpha1 subunit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below