Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1459c_(-)_1644369_1646144
DateFri Aug 2 13:30:04 BST 2019
Unique Job ID9d88150a2001f3ce
SequenceMAARHHTLSW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.221 Y:47.595 Z:60.952
Model (left) based on template c5f15A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
Confidence and coverage
Confidence: 99.0% Coverage: 60%
353 residues ( 60% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
406 residues ( 69%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5f15A_



99.0 15
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
2c6p25A_



98.4 17
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
3c6p2rB_



98.1 16
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
4c3wajA_



97.8 14
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
5c3rceA_



96.9 11
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
6c2kfvA_



36.0 26
PDB header:isomerase
Chain: A: PDB Molecule:fk506-binding protein 3;
PDBTitle: structure of the amino-terminal domain of human fk506-2 binding protein 3 / northeast structural genomics3 consortium target ht99a
7c6adqP_



30.6 14
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
8d1ynjd1



30.2 22
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
9c5ir6A_



26.7 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
10d2r6gf1



25.9 7
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
11c4g7oN_



25.5 25
PDB header:transcription, transferase/dna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex containing 2 nt of rna
12c5xj0D_



24.8 25
PDB header:transferase/transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
13c5x22D_



18.9 25
PDB header:transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex with gpa and cmpcpp
14d1zxoa1



18.5 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
15d2e74b1



16.7 16
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
16d1zbsa2



15.8 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
17d1vf5b_



15.2 16
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
18d1q90d_



12.8 10
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
19d1r9fa_



11.5 25
Fold:Tombusvirus P19 core protein, VP19
Superfamily:Tombusvirus P19 core protein, VP19
Family:Tombusvirus P19 core protein, VP19
20c3e1kJ_



11.5 36
PDB header:transcription
Chain: J: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
21c3e1kL_



not modelled 11.5 36
PDB header:transcription
Chain: L: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
22c3e1kB_



not modelled 11.5 36
PDB header:transcription
Chain: B: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
23c3e1kD_



not modelled 11.5 36
PDB header:transcription
Chain: D: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
24c3e1kH_



not modelled 11.5 36
PDB header:transcription
Chain: H: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
25c3e1kP_



not modelled 11.5 36
PDB header:transcription
Chain: P: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
26c3e1kN_



not modelled 11.5 36
PDB header:transcription
Chain: N: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
27c3e1kF_



not modelled 11.5 36
PDB header:transcription
Chain: F: PDB Molecule:lactose regulatory protein lac9;
PDBTitle: crystal structure of kluyveromyces lactis gal80p in complex with the2 acidic activation domain of gal4p
28c3qqcA_



not modelled 11.1 25
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna
PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain
29c3aoiN_



not modelled 9.4 25
PDB header:transcription, transferase/dna/rna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: rna polymerase-gfh1 complex (crystal type 2)
30c4iuwA_



not modelled 8.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:neutral endopeptidase;
PDBTitle: crystal structure of pepo from lactobacillus rhamnosis hn001 (dr20)
31c3aoiI_



not modelled 8.7 25
PDB header:transcription, transferase/dna/rna
Chain: I: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: rna polymerase-gfh1 complex (crystal type 2)
32c2o5jN_



not modelled 8.1 25
PDB header:transferase/dna-rna hybrid
Chain: N: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rnap polymerase elongation2 complex with the ntp substrate analog
33c2owrD_



not modelled 8.0 54
PDB header:hydrolase
Chain: D: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase
34d1smyd_



not modelled 7.9 25
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
35c3fmtF_



not modelled 7.8 40
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
36d1xrxa1



not modelled 7.3 50
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
37c1xrxD_



not modelled 7.3 50
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
38c3dwbA_



not modelled 7.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:endothelin-converting enzyme 1;
PDBTitle: structure of human ece-1 complexed with phosphoramidon
39c5nn7A_



not modelled 6.9 43
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: kshv uracil-dna glycosylase, apo form
40c6eznF_



not modelled 6.7 10
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
41c4y0lA_



not modelled 6.4 44
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmpl11;
PDBTitle: mycobacterial membrane protein mmpl11d2
42c3w52A_



not modelled 6.4 30
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 2;
PDBTitle: zinc-dependent bifunctional nuclease
43c3sngA_



not modelled 6.4 30
PDB header:hydrolase
Chain: A: PDB Molecule:nuclease;
PDBTitle: x-ray structure of fully glycosylated bifunctional nuclease tbn1 from2 solanum lycopersicum (tomato)
44d2hu7a1



not modelled 6.3 56
Fold:7-bladed beta-propeller
Superfamily:Peptidase/esterase 'gauge' domain
Family:Acylamino-acid-releasing enzyme, N-terminal donain
45c3gwqB_



not modelled 6.2 25
PDB header:lyase
Chain: B: PDB Molecule:d-serine deaminase;
PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution
46c5tw1D_



not modelled 6.2 50
PDB header:transcription activator/transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
47c2o5iD_



not modelled 6.1 25
PDB header:transferase/dna-rna hybrid
Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rna polymerase elongation2 complex
48c5z3dA_



not modelled 6.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase 15-related protein;
PDBTitle: glycosidase f290y
49c1qfqB_



not modelled 6.0 55
PDB header:transcription/rna
Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein;
PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex
50d1ak0a_



not modelled 5.8 10
Fold:Phospholipase C/P1 nuclease
Superfamily:Phospholipase C/P1 nuclease
Family:P1 nuclease
51c4qiwA_



not modelled 5.7 25
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
52c6iu3A_



not modelled 5.7 9
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
53d1dmta_



not modelled 5.7 14
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Neutral endopeptidase (neprilysin)
54c2mckA_



not modelled 5.6 37
PDB header:hydrolase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus cr6 ns1/2 protein
55c2mmuA_



not modelled 5.6 40
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein crga;
PDBTitle: structure of crga, a cell division structural and regulatory protein2 from mycobacterium tuberculosis, in lipid bilayers
56c5lmxA_



not modelled 5.4 25
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa190;
PDBTitle: monomeric rna polymerase i at 4.9 a resolution
57c1zzaA_



not modelled 5.3 21
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
58c5fbfA_



not modelled 5.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:nuclease s1;
PDBTitle: s1 nuclease from aspergillus oryzae in complex with two molecules of2 2'-deoxycytidine-5'-monophosphate
59c1i6hA_



not modelled 5.2 25
PDB header:transcription/dna-rna hybrid
Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit;
PDBTitle: rna polymerase ii elongation complex
60c5fjaA_



not modelled 5.1 38
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc1;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
61d1alna2



not modelled 5.1 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase

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