Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1462_(-)_1649532_1650725
DateFri Aug 2 13:30:04 BST 2019
Unique Job ID38d11490c9ebb821
SequenceMTAPGLTAAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.008 Y:67.180 Z:56.934
Model (left) based on template d1vh4a_
Top template information
Fold:Single-stranded right-handed beta-helix
Superfamily:Stabilizer of iron transporter SufD
Family:Stabilizer of iron transporter SufD
Confidence and coverage
Confidence:100.0% Coverage: 92%
364 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vh4a_



100.0 23
Fold:Single-stranded right-handed beta-helix
Superfamily:Stabilizer of iron transporter SufD
Family:Stabilizer of iron transporter SufD
2c5awfA_



100.0 16
PDB header:transport protein/protein binding
Chain: A: PDB Molecule:fes cluster assembly protein sufb;
PDBTitle: crystal structure of sufb-sufc-sufd complex from escherichia coli
3c4dn7B_



100.0 17
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: crystal structure of putative abc transporter, atp-binding protein2 from methanosarcina mazei go1
4c3sf5D_



90.6 14
PDB header:chaperone
Chain: D: PDB Molecule:urease accessory protein ureh;
PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex
5c2dagA_



78.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
6d1whca_



71.7 20
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
7c2daiA_



70.6 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquitin associated domain containing 1;
PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1)
8d1veka_



66.4 15
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
9c5w34A_



63.5 29
PDB header:transferase
Chain: A: PDB Molecule:dna primase;
PDBTitle: crystal structure of the rna polymerase domain (rpd) of mycobacterium2 tuberculosis primase dnag in complex with double-stranded dna3 gaccggaagtgg
10c1dd9A_



62.4 22
PDB header:transferase
Chain: A: PDB Molecule:dna primase;
PDBTitle: structure of the dnag catalytic core
11d1dd9a_



62.4 22
Fold:DNA primase core
Superfamily:DNA primase core
Family:DNA primase DnaG catalytic core
12c2crnA_



62.2 20
PDB header:immune system
Chain: A: PDB Molecule:ubash3a protein;
PDBTitle: solution structure of the uba domain of human ubash3a2 protein
13d1wiva_



60.0 26
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
14c2mroB_



59.2 15
PDB header:transport protein/signaling protein
Chain: B: PDB Molecule:dna damage-inducible protein 1;
PDBTitle: structure of the complex of ubiquitin and the uba domain from dna-2 damage-inducible 1 protein (ddi1)
15c5gujA_



57.6 35
PDB header:transferase
Chain: A: PDB Molecule:dna primase;
PDBTitle: crystal structure of the bacillus subtilis dnag rna polymerase domain,2 natural degradation of full length dnag
16c4edvA_



56.7 25
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:dna primase;
PDBTitle: the structure of the s. aureus dnag rna polymerase domain bound to2 pppgpp and manganese
17c2lbcA_



54.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 13;
PDBTitle: solution structure of tandem uba of usp13
18c5svdA_



54.3 18
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 9;
PDBTitle: nop9, a new puf-like protein, prevents premature pre-rrna cleavage to2 correctly process mature 18s rrna
19c5vazB_



54.3 30
PDB header:transferase
Chain: B: PDB Molecule:dna primase;
PDBTitle: crystal structure of a dna primase domain from pseudomonas aeruginosa
20c4jrbA_



53.6 15
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
21d1nuia1



not modelled 50.0 27
Fold:DNA primase core
Superfamily:DNA primase core
Family:Primase fragment of primase-helicase protein
22d2csba4



not modelled 49.6 32
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
23d1p32a_



not modelled 49.1 30
Fold:Mitochondrial glycoprotein MAM33-like
Superfamily:Mitochondrial glycoprotein MAM33-like
Family:Mitochondrial glycoprotein MAM33-like
24c2dakA_



not modelled 48.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
25d2cpwa1



not modelled 47.6 29
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
26c6gcsc_



not modelled 47.4 40
PDB header:oxidoreductase
Chain: C: PDB Molecule:49-kda protein (nucm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
27d2crna1



not modelled 46.9 21
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
28c2cpwA_



not modelled 45.3 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant;
PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna
29c2o2kA_



not modelled 43.7 22
PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n
30c3ic3C_



not modelled 43.3 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative pyruvate dehydrogenase;
PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009
31d1yqfa1



not modelled 43.1 35
Fold:Mitochondrial glycoprotein MAM33-like
Superfamily:Mitochondrial glycoprotein MAM33-like
Family:Mitochondrial glycoprotein MAM33-like
32c2f46A_



not modelled 41.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution
33c3qv0A_



not modelled 40.1 39
PDB header:protein binding
Chain: A: PDB Molecule:mitochondrial acidic protein mam33;
PDBTitle: crystal structure of saccharomyces cerevisiae mam33
34c1q57G_



not modelled 38.5 27
PDB header:transferase
Chain: G: PDB Molecule:dna primase/helicase;
PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
35d1vega_



not modelled 37.8 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
36c3fp5A_



not modelled 37.6 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl-coa binding protein;
PDBTitle: crystal structure of acbp from moniliophthora perniciosa
37c3jv1A_



not modelled 37.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:p22 protein;
PDBTitle: crystal structure of the trypanosoma brucei p22 protein
38d1mska_



not modelled 37.1 22
Fold:Methionine synthase activation domain-like
Superfamily:Methionine synthase activation domain-like
Family:Methionine synthase SAM-binding domain
39d1rfza_



not modelled 35.7 15
Fold:YutG-like
Superfamily:YutG-like
Family:YutG-like
40c2wknE_



not modelled 34.6 35
PDB header:hydrolase
Chain: E: PDB Molecule:formamidase;
PDBTitle: gamma lactamase from delftia acidovorans
41d1ifya_



not modelled 34.6 19
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
42d1wfda_



not modelled 32.8 17
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
43d1n9pa_



not modelled 32.3 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cytoplasmic domain of inward rectifier potassium channel
44c2zc1A_



not modelled 29.7 37
PDB header:hydrolase
Chain: A: PDB Molecule:phosphotriesterase;
PDBTitle: organophosphorus hydrolase from deinococcus radiodurans
45c2au3A_



not modelled 29.0 40
PDB header:transferase
Chain: A: PDB Molecule:dna primase;
PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains)
46d1oqya1



not modelled 28.1 15
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
47d2e1za2



not modelled 28.1 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
48c3e3vA_



not modelled 27.7 13
PDB header:recombination
Chain: A: PDB Molecule:regulatory protein recx;
PDBTitle: crystal structure of recx from lactobacillus salivarius
49c5lnkn_



not modelled 27.0 36
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
50d1g99a2



not modelled 25.8 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
51d2g3qa1



not modelled 24.6 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
52c3tn6A_



not modelled 24.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:phosphotriesterase;
PDBTitle: crystal structure of gkap mutant r230h from geobacillus kaustophilus2 hta426
53c5cqvB_



not modelled 23.2 11
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein q8dwv2 from streptococcus2 agalactiae
54d1yqga1



not modelled 23.1 17
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
55c3slcA_



not modelled 23.0 19
PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of apo form of acetate kinase (acka) from salmonella2 typhimurium
56d1v3aa_



not modelled 22.2 18
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
57c6ioyD_



not modelled 22.2 23
PDB header:transferase
Chain: D: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of porphyromonas gingivalis acetate kinase
58d2ddha2



not modelled 21.5 27
Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
59c4zv4C_



not modelled 20.9 25
PDB header:translation
Chain: C: PDB Molecule:tse6;
PDBTitle: structure of tse6 in complex with ef-tu
60c4rg6S_



not modelled 20.7 40
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex
61c4rg9S_



not modelled 20.5 40
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex (selenomethionine derivative)
62c1tuuA_



not modelled 20.4 19
PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
63c3ff5B_



not modelled 20.1 8
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
64d1kx5d_



not modelled 18.8 21
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
65c1nuiA_



not modelled 18.4 27
PDB header:replication
Chain: A: PDB Molecule:dna primase/helicase;
PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
66c3khyA_



not modelled 18.3 13
PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella tularensis2 subsp. tularensis schu s4
67d1auaa1



not modelled 18.2 23
Fold:RuvA C-terminal domain-like
Superfamily:CRAL/TRIO N-terminal domain
Family:CRAL/TRIO N-terminal domain
68c5l87A_



not modelled 18.2 14
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
69c4ijnB_



not modelled 17.7 19
PDB header:transferase
Chain: B: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of an acetate kinase from mycobacterium smegmatis2 bound to amp and sulfate
70c3rhgA_



not modelled 17.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:putative phophotriesterase;
PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320
71c5cofA_



not modelled 17.6 11
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterised protein q1r1x2 from escherichia2 coli uti89
72d1oiza1



not modelled 17.5 31
Fold:RuvA C-terminal domain-like
Superfamily:CRAL/TRIO N-terminal domain
Family:CRAL/TRIO N-terminal domain
73c2kerA_



not modelled 17.5 43
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
74d1ok0a_



not modelled 17.5 29
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
75c2d9sA_



not modelled 17.1 20
PDB header:ligase
Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase;
PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
76c1sazA_



not modelled 16.9 19
PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
77c4if2A_



not modelled 16.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:phosphotriesterase homology protein;
PDBTitle: structure of the phosphotriesterase from mycobacterium tuberculosis
78c4n6cB_



not modelled 16.8 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the b1rzq2 protein from streptococcus pneumoniae.2 northeast structural genomics consortium (nesg) target spr36.
79c1x3nA_



not modelled 16.7 16
PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
80c4h0pB_



not modelled 16.6 14
PDB header:transferase
Chain: B: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from cryptococcus neoformans
81c4wzxA_



not modelled 16.5 17
PDB header:cell cycle
Chain: A: PDB Molecule:serine/threonine-protein kinase ulk3;
PDBTitle: ulk3 regulates cytokinetic abscission by phosphorylating escrt-iii2 proteins
82c3hy5A_



not modelled 16.4 21
PDB header:transport protein
Chain: A: PDB Molecule:retinaldehyde-binding protein 1;
PDBTitle: crystal structure of cralbp
83d1eqzb_



not modelled 16.2 26
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
84c3my3A_



not modelled 15.9 10
PDB header:transcription
Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial;
PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3
85c2w85A_



not modelled 15.7 8
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
86c3okzB_



not modelled 15.6 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
87d1wjia_



not modelled 15.6 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
88c5aonB_



not modelled 15.5 14
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
89d1s32d_



not modelled 15.2 21
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
90d2ahra1



not modelled 15.1 14
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
91d1saza2



not modelled 15.0 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
92c5v8cA_



not modelled 14.6 28
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: lytr-csp2a-psr enzyme from actinomyces oris
93d2gcla1



not modelled 14.5 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:SSRP1-like
94c3m66A_



not modelled 14.3 10
PDB header:transcription
Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial;
PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3
95c4ui9E_



not modelled 14.2 40
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: atomic structure of the human anaphase-promoting complex
96c2v6xA_



not modelled 13.5 15
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: stractural insight into the interaction between escrt-iii and vps4
97d1aopa3



not modelled 13.5 12
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
98c2iirJ_



not modelled 13.3 16
PDB header:transferase
Chain: J: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
99d2gu3a1



not modelled 13.1 36
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:PepSY-like

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