Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1465_(-)_1652774_1653262
DateFri Aug 2 13:30:04 BST 2019
Unique Job ID1fe4e1ed9065cc64
SequenceVTLRLEQIYQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.269 Y:39.488 Z:34.725
Model (left) based on template c5uftA_
Top template information
PDB header:metal binding protein
Chain: A: PDB Molecule:nitrogen-fixing nifu-like, n-terminal;
PDBTitle: crystal structure of a nitrogen-fixing nifu-like protein (n-terminal)2 from brucella abortus
Confidence and coverage
Confidence:100.0% Coverage: 87%
141 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5uftA_
100.0 28
PDB header:metal binding protein
Chain: A: PDB Molecule:nitrogen-fixing nifu-like, n-terminal;
PDBTitle: crystal structure of a nitrogen-fixing nifu-like protein (n-terminal)2 from brucella abortus
2d1xjsa_
100.0 37
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
3d1su0b_
100.0 40
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
4c2qq4A_
100.0 42
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu;
PDBTitle: crystal structure of iron-sulfur cluster biosynthesis protein iscu2 (ttha1736) from thermus thermophilus hb8
5c2z7eB_
100.0 25
PDB header:biosynthetic protein
Chain: B: PDB Molecule:nifu-like protein;
PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster
6c4eb5C_
100.0 23
PDB header:transferase/metal binding protein
Chain: C: PDB Molecule:nifu protein (nifu-1);
PDBTitle: a. fulgidus iscs-iscu complex structure
7d1r9pa_
100.0 26
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
8d1wfza_
100.0 27
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
9c2e5aA_
85.6 11
PDB header:ligase
Chain: A: PDB Molecule:lipoyltransferase 1;
PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp
10c3r07C_
83.0 17
PDB header:transferase
Chain: C: PDB Molecule:putative lipoate-protein ligase a subunit 2;
PDBTitle: structural analysis of an archaeal lipoylation system. a bi-partite2 lipoate protein ligase and its e2 lipoyl domain from thermoplasma3 acidophilum
11d1v97a4
78.3 9
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
12c5t8uA_
68.3 9
PDB header:ligase
Chain: A: PDB Molecule:lipoate-protein ligase 1;
PDBTitle: crystal structure of p. falciparum lipl1 in complex lipoate
13c3j21S_
65.7 20
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l22p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
14c4a17Q_
63.0 13
PDB header:ribosome
Chain: Q: PDB Molecule:rpl17;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
15d1vqor1
60.6 13
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
16d1ffvc1
53.1 13
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
17c1x2gB_
52.9 16
PDB header:ligase
Chain: B: PDB Molecule:lipoate-protein ligase a;
PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli
18c3jywN_
52.8 15
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
19c1vw4O_
51.7 18
PDB header:ribosome
Chain: O: PDB Molecule:54s ribosomal protein l22, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
20c2zkrr_
51.1 25
PDB header:ribosomal protein/rna
Chain: R: PDB Molecule:rna expansion segment es39 part i;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
21c3zf7R_
not modelled 50.6 21
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l17, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
22c5ibyA_
not modelled 50.3 11
PDB header:ligase,transferase
Chain: A: PDB Molecule:lipoate--protein ligase;
PDBTitle: crystal structure of enterococcus faecalis lipoate-protein ligase a2 (lpla-2) in complex with lipoic acid
23c3u5eP_
not modelled 49.9 21
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
24c5ij6A_
not modelled 46.4 15
PDB header:ligase,transferase
Chain: A: PDB Molecule:lipoate--protein ligase;
PDBTitle: crystal structure of enterococcus faecalis lipoate-protein ligase a2 (lpla-1) in complex with lipoic acid
25c5mlcU_
not modelled 46.3 19
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l22, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
26c3j39P_
not modelled 44.2 20
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
27c1vqzA_
not modelled 43.2 13
PDB header:ligase
Chain: A: PDB Molecule:lipoate-protein ligase, putative;
PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution
28c3kioA_
not modelled 42.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease h2 subunit a;
PDBTitle: mouse rnase h2 complex
29d2zjrp1
not modelled 42.3 18
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
30c4v19W_
not modelled 41.9 24
PDB header:ribosome
Chain: W: PDB Molecule:mitoribosomal protein ul22m, mrpl22;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
31d1fs1b1
not modelled 41.8 4
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
32c3ibqA_
not modelled 41.1 17
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from lactobacillus plantarum in2 complex with atp
33c5o60T_
not modelled 40.8 24
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l22;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
34d1ekea_
not modelled 40.6 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
35d1i4ja_
not modelled 39.8 21
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
36d1u0la1
not modelled 39.6 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
37c3iz5V_
not modelled 39.4 22
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l17 (l22p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
38d1fs2b1
not modelled 37.1 4
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
39d1n62c1
not modelled 36.1 12
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
40c4ce4W_
not modelled 35.3 22
PDB header:ribosome
Chain: W: PDB Molecule:mrpl22;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
41d1t3qc1
not modelled 33.5 12
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
42d1mzga_
not modelled 33.5 15
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
43c2ftcM_
not modelled 33.0 24
PDB header:ribosome
Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
44d1nexa1
not modelled 32.9 15
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
45d1vqza1
not modelled 32.4 14
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
46d2ovra1
not modelled 31.9 4
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
47c3j3wS_
not modelled 31.6 18
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l22;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
48d1vi9a_
not modelled 30.5 25
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
49c1i3aA_
not modelled 30.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: rnase hii from archaeoglobus fulgidus with cobalt hexammine2 chloride
50d1t9ha1
not modelled 30.0 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
51d1ni7a_
not modelled 29.7 20
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
52d1x2ga1
not modelled 28.0 14
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
53d1i39a_
not modelled 27.1 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
54c3zs7A_
not modelled 26.3 14
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from trypanosoma brucei
55c3rm5B_
not modelled 24.2 26
PDB header:transferase
Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
PDBTitle: structure of trifunctional thi20 from yeast
56d2axoa1
not modelled 23.1 24
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Atu2684-like
57d1io2a_
not modelled 21.7 12
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
58d1uaxa_
not modelled 20.4 10
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
59d1jxha_
not modelled 19.3 25
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
60d1jroa3
not modelled 19.0 11
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
61c2axoA_
not modelled 17.5 24
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein atu2684;
PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35.
62d1r8ja1
not modelled 17.1 11
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
63d1v2za_
not modelled 17.0 22
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
64d1sv1a_
not modelled 16.7 22
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
65c5y1aA_
not modelled 16.6 5
PDB header:electron transport
Chain: A: PDB Molecule:35 kda hemin binding protein;
PDBTitle: hbp35 of porphyromonas gingivalis
66d1r5qa_
not modelled 14.8 17
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
67c3bboU_
not modelled 14.6 21
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein l22;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
68c2p1nD_
not modelled 14.2 4
PDB header:signaling protein
Chain: D: PDB Molecule:skp1-like protein 1a;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
69c4xgrF_
not modelled 14.1 50
PDB header:toxin/antitoxin
Chain: F: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
70c4xgrH_
not modelled 13.9 50
PDB header:toxin/antitoxin
Chain: H: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
71c2w3rG_
not modelled 13.9 15
PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
72c1nexC_
not modelled 13.7 15
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
73d1y5ia2
not modelled 13.3 15
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
74d1lhpa_
not modelled 13.1 17
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
75c4xgqB_
not modelled 13.1 50
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
76c4xgqD_
not modelled 12.4 50
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
77c3nyeA_
not modelled 12.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
78c5y9pA_
not modelled 11.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: staphylococcus aureus rnase hii
79c3etrM_
not modelled 11.2 10
PDB header:oxidoreductase
Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of xanthine oxidase in complex with lumazine
80c3b9jJ_
not modelled 11.2 10
PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
81d1v65a_
not modelled 10.8 15
Fold:KRAB domain (Kruppel-associated box)
Superfamily:KRAB domain (Kruppel-associated box)
Family:KRAB domain (Kruppel-associated box)
82c5yepC_
not modelled 10.7 12
PDB header:antitoxin/toxin
Chain: C: PDB Molecule:toxin-antitoxin system toxin hepn family;
PDBTitle: crystal structure of so_3166-so_3165 from shewanella oneidensis
83c5jwrE_
not modelled 10.5 22
PDB header:transcription regulator
Chain: E: PDB Molecule:circadian clock protein kaia;
PDBTitle: crystal structure of foldswitch-stabilized kaib in complex with the n-2 terminal ci domain of kaic and a dimer of kaia c-terminal domains3 from thermosynechococcus elongatus
84c1zeqX_
not modelled 9.9 19
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
85c4qe0B_
not modelled 9.7 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf5043 family protein (bacuni_01052) from2 bacteroides uniformis atcc 8492 at 1.85 a resolution
86c5i1tA_
not modelled 9.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:stage ii sporulation protein d;
PDBTitle: 2.6 angstrom resolution crystal structure of stage ii sporulation2 protein d (spoiid) from clostridium difficile in complex with3 triacetylchitotriose
87c4yl5A_
not modelled 8.6 18
PDB header:transferase
Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase;
PDBTitle: structure of a putative phosphomethylpyrimidine kinase from2 acinetobacter baumannii
88c6d7kD_
not modelled 8.6 23
PDB header:oxidoreductase/inhibitor
Chain: D: PDB Molecule:methane monooxygenase hydroxylase, mmod;
PDBTitle: complex structure of methane monooxygenase hydroxylase in complex with2 inhibitory subunit
89c3iz5w_
not modelled 8.5 27
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
90d1o5ha_
not modelled 8.5 17
Fold:Methenyltetrahydrofolate cyclohydrolase-like
Superfamily:Methenyltetrahydrofolate cyclohydrolase-like
Family:Methenyltetrahydrofolate cyclohydrolase-like
91d1iloa_
not modelled 8.4 20
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
92c2ovqA_
not modelled 8.2 4
PDB header:transcription/cell cycle
Chain: A: PDB Molecule:s-phase kinase-associated protein 1a;
PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
93c5vodD_
not modelled 7.9 24
PDB header:viral protein/immune system
Chain: D: PDB Molecule:envelope glycoprotein ul130;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 9i6
94c2fgxA_
not modelled 7.8 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.
95c2l55A_
not modelled 7.6 29
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
96c3w4sB_
not modelled 7.5 15
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate/pyrimidine kinase, pfkb family;
PDBTitle: myo-inositol kinase from thermococcus kodakarensis
97c1r8jB_
not modelled 7.3 11
PDB header:circadian clock protein
Chain: B: PDB Molecule:kaia;
PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus
98c2lqoA_
not modelled 7.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative glutaredoxin rv3198.1/mt3292;
PDBTitle: mrx1 reduced
99c3axbA_
not modelled 6.8 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of a dye-linked l-proline dehydrogenase from the aerobic2 hyperthermophilic archaeon, aeropyrum pernix

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