Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1473A_(-)_1662387_1662578
DateFri Aug 2 13:30:05 BST 2019
Unique Job IDf2ddc9d52950bd00
SequenceMRKSKKTRDQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.222 Y:25.949 Z:19.135
Model (left) based on template c2r0qF_
Top template information
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
Confidence and coverage
Confidence: 88.9% Coverage: 67%
42 residues ( 67% of your sequence) have been modelled with 88.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2r0qF_
88.9 12
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
2c1u78A_
83.9 20
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
3c6paxA_
75.8 21
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
4d1k78a1
75.3 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
5c2gm4B_
73.5 15
PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
6d1rr7a_
69.4 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Middle operon regulator, Mor
7c1rr7A_
69.4 13
PDB header:transcription
Chain: A: PDB Molecule:middle operon regulator;
PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
8d6paxa1
69.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
9d1pdnc_
64.3 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
10c2o8xA_
56.8 24
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
11d1or7a1
55.0 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
12d1nera_
48.2 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
13c6dvdF_
45.2 20
PDB header:transferase/dna
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigl;
PDBTitle: crystal structure of mycobacterium tuberculosis transcription2 initiation complex(ecf sigma factor l) with 6 nt spacer and bromine3 labelled in position "-11
14c3mzyA_
44.8 17
PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
15c3hugA_
44.0 24
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
16c2bnoA_
44.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase from s.2 wedmorenis.
17c4hf1B_
43.4 16
PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator iscr;
PDBTitle: crystal structure of iscr bound to its promoter
18d1xsva_
43.0 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
19d1s7oa_
42.8 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
20c3t8tA_
42.0 24
PDB header:unknown function
Chain: A: PDB Molecule:staphylococcus aureus cymr (oxidized form);
PDBTitle: crystal structure of staphylococcus aureus cymr oxidized form
21c3hefB_
not modelled 41.4 11
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
22c6j0eB_
not modelled 41.2 27
PDB header:transcription
Chain: B: PDB Molecule:arsenic responsive repressor arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression
23d1rp3a2
not modelled 40.5 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
24c6hsdB_
not modelled 39.3 13
PDB header:transcription
Chain: B: PDB Molecule:rrf2 family transcriptional regulator;
PDBTitle: crystal structure of the oxidized form of the transcription regulator2 rsrr
25c2lfwA_
not modelled 37.7 11
PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
26c3t0yA_
not modelled 36.1 8
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
27d1r71a_
not modelled 35.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
28d2g7ga1
not modelled 35.0 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
29c1r71B_
not modelled 34.7 15
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
30c1y9qA_
not modelled 33.9 26
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
31c3lsgD_
not modelled 33.8 11
PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
32c2k27A_
not modelled 32.9 16
PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
33d1ku3a_
not modelled 32.8 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
34d1ttya_
not modelled 32.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
35c3vepA_
not modelled 31.4 19
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
36c4go1A_
not modelled 31.2 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
37d1vz0a1
not modelled 31.0 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
38c5wurB_
not modelled 30.7 11
PDB header:metal binding protein
Chain: B: PDB Molecule:ecf rna polymerase sigma factor sigw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
39c4cicB_
not modelled 30.1 20
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, badm/rrf2 family;
PDBTitle: t. potens iscr
40d2p7vb1
not modelled 28.3 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
41c3vdoA_
not modelled 27.2 21
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
42c5z7iC_
not modelled 26.2 24
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
43c5yszA_
not modelled 25.5 21
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: transcriptional regulator celr-cellobiose complex
44d2ofya1
not modelled 25.5 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
45c3h5tA_
not modelled 25.3 17
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
46d1qpza1
not modelled 25.1 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
47c5fgmA_
not modelled 25.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigr;
PDBTitle: streptomyces coelicolor sigr region 4
48c4cxfA_
not modelled 24.8 14
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor cnrh;
PDBTitle: structure of cnrh in complex with the cytosolic domain of cnry
49c5chhA_
not modelled 24.3 20
PDB header:transcription
Chain: A: PDB Molecule:arac family transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator cdpr from pseudomonas2 aeruginosa
50c1bdhA_
not modelled 24.3 13
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
51d1mkma1
not modelled 23.9 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
52c2elhA_
not modelled 23.6 13
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
53c3mklB_
not modelled 23.4 17
PDB header:transcription regulator
Chain: B: PDB Molecule:hth-type transcriptional regulator gadx;
PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12
54c1rp3G_
not modelled 23.2 8
PDB header:transcription
Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia);
PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma complex, sigma-2 28/flgm
55c6in7B_
not modelled 22.0 16
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: crystal structure of algu in complex with muca(cyto)
56c6j05B_
not modelled 22.0 23
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression
57c1efaA_
not modelled 21.8 17
PDB header:transcription/dna
Chain: A: PDB Molecule:lac repressor;
PDBTitle: crystal structure of the lac repressor dimer bound to operator and the2 anti-inducer onpf
58c6c03A_
not modelled 21.8 19
PDB header:transcription
Chain: A: PDB Molecule:putative rna polymerase ecf-subfamily sigma factor;
PDBTitle: the crystal structure streptomyces venezuelae rsbn-bldn complex
59c1sgmA_
not modelled 20.1 14
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
60c3korD_
not modelled 19.0 18
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
61c5ipmF_
not modelled 18.9 14
PDB header:transcription, transferase/dna/rna
Chain: F: PDB Molecule:rna polymerase sigma factor rpos;
PDBTitle: sigmas-transcription initiation complex with 4-nt nascent rna
62c2y75F_
not modelled 18.4 23
PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator of b.2 subtilis
63d1z0xa1
not modelled 18.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
64c5dukA_
not modelled 18.0 17
PDB header:transcription
Chain: A: PDB Molecule:putative dna binding protein;
PDBTitle: n-terminal structure of putative dna binding transcription factor from2 thermoplasmatales archaeon scgc ab-539-n05
65d2bjca1
not modelled 17.4 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
66d2hsga1
not modelled 17.3 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
67d2hkua1
not modelled 16.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
68c3b7hA_
not modelled 16.4 20
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
69c1zvvA_
not modelled 16.3 13
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
70c3neuA_
not modelled 16.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
71c5zx3F_
not modelled 16.0 19
PDB header:transcription
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigh;
PDBTitle: mycobacterium tuberculosis rna polymerase holoenzyme with ecf sigma2 factor sigma h
72c2l8nA_
not modelled 15.6 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
73c2hxiA_
not modelled 15.4 33
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from streptomyces coelicolor a3(2)
74d1efaa1
not modelled 14.9 20
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
75c3g7rB_
not modelled 14.5 10
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional regulator2 from streptomyces coelicolor
76d2fx0a1
not modelled 14.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
77d1r1ua_
not modelled 13.7 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
78d3bwga1
not modelled 13.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
79d1adra_
not modelled 13.6 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
80c5d50I_
not modelled 13.5 17
PDB header:dna binding protein
Chain: I: PDB Molecule:repressor;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
81d1tc3c_
not modelled 13.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
82c2g7gA_
not modelled 13.4 18
PDB header:transcription
Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
83c3cuoB_
not modelled 13.1 26
PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
84c2l0kA_
not modelled 13.1 31
PDB header:transcription
Chain: A: PDB Molecule:stage iii sporulation protein d;
PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna
85c1bl0A_
not modelled 12.9 17
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex
86c2wuiA_
not modelled 12.7 29
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
87c1or7A_
not modelled 12.7 16
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
88c3j3wQ_
not modelled 12.7 31
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l20;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
89d2iu5a1
not modelled 12.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
90d1gyza_
not modelled 12.6 19
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
91c4za6A_
not modelled 12.6 16
PDB header:signaling protein
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: structure of the r. erythropolis transcriptional repressor qsdr from2 tetr family
92c2lvsA_
not modelled 12.6 26
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr solution structure of a crispr repeat binding protein
93c2kkoB_
not modelled 12.4 23
PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
94c6mj1A_
not modelled 12.3 24
PDB header:dna binding protein
Chain: A: PDB Molecule:probable hth-type transcriptional regulator yttp;
PDBTitle: crystal structure of refz (regulator of ftsz) from bacillus subtilis
95c5uxxC_
not modelled 12.2 18
PDB header:dna binding protein/unknown function
Chain: C: PDB Molecule:rna polymerase sigma factor;
PDBTitle: co-crystal structure of the sigma factor rpoe in complex with the2 anti-sigma factor nepr from bartonella quintana
96d2d6ya1
not modelled 12.1 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
97d2a6ca1
not modelled 12.1 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
98c3frwF_
not modelled 12.0 18
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative trp repressor protein;
PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
99d2j01u1
not modelled 12.0 19
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20

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