Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1475c_(acn)_1663221_1666052
DateFri Aug 2 13:30:05 BST 2019
Unique Job ID6c52ce9bead7e5c7
SequenceVTSKSVNSFG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:76.253 Y:79.678 Z:75.969
Model (left) based on template c2b3yB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
Confidence and coverage
Confidence:100.0% Coverage: 93%
878 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2b3yB_



100.0 52
PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
2c5acnA_



100.0 29
PDB header:lyase(carbon-oxygen)
Chain: A: PDB Molecule:aconitase;
PDBTitle: structure of activated aconitase. formation of the (4fe-4s) cluster in2 the crystal
3d2b3ya2



100.0 51
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
4d1acoa2



100.0 31
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
5c4kp1A_



100.0 25
PDB header:isomerase
Chain: A: PDB Molecule:isopropylmalate/citramalate isomerase large subunit;
PDBTitle: crystal structure of ipm isomerase large subunit from methanococcus2 jannaschii (mj0499)
6c4kp2A_



100.0 24
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase large subunit;
PDBTitle: crystal structure of homoaconitase large subunit from methanococcus2 jannaschii (mj1003)
7d1l5ja3



100.0 22
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
8c1l5jB_



100.0 23
PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.
9d2b3ya1



100.0 52
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
10d1acoa1



100.0 26
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
11d1l5ja2



100.0 22
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
12c3vbaE_



100.0 29
PDB header:lyase
Chain: E: PDB Molecule:isopropylmalate/citramalate isomerase small subunit;
PDBTitle: crystal structure of methanogen 3-isopropylmalate isomerase small2 subunit
13c2pkpA_



100.0 30
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase small subunit;
PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271)
14d1v7la_



100.0 36
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
15c2hcuA_



100.0 25
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus mutans
16c3q3wB_



100.0 25
PDB header:transferase
Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni.
17c3h5jA_



100.0 27
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
18d1cf1a1



72.3 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arrestin/Vps26-like
19d1g4ma1



71.5 34
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arrestin/Vps26-like
20d2r4qa1



71.4 32
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
21c4zwjC_



not modelled 59.2 16
PDB header:signaling protein
Chain: C: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
22c4zwjA_



not modelled 59.1 16
PDB header:signaling protein
Chain: A: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
23c4jxdA_



not modelled 54.4 15
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 3;
PDBTitle: crystal structure of predicted fructose specific iib from escherichia2 coli
24c3qm3C_



not modelled 52.6 26
PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: 1.85 angstrom resolution crystal structure of fructose-bisphosphate2 aldolase (fba) from campylobacter jejuni
25c5dleD_



not modelled 50.3 21
PDB header:transferase
Chain: D: PDB Molecule:pts system, fructose-specific iiabc component;
PDBTitle: crystal structure from a domain (thr161-f265) from fructose-specific2 iiabc component (pts system) from borrelia burgdorferi
26d1dosa_



not modelled 50.0 19
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
27c2kyrA_



not modelled 49.3 27
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
28d2r48a1



not modelled 48.9 33
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
29c6bk9A_



not modelled 48.8 22
PDB header:signaling protein
Chain: A: PDB Molecule:visual arrestin;
PDBTitle: crystal structure of squid arrestin
30c4e6nC_



not modelled 48.6 25
PDB header:protein binding
Chain: C: PDB Molecule:metallophosphoesterase;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
31c2m1zA_



not modelled 46.0 27
PDB header:transferase
Chain: A: PDB Molecule:lmo0427 protein;
PDBTitle: solution structure of uncharacterized protein lmo0427
32c4y0bA_



not modelled 40.3 11
PDB header:protein binding
Chain: A: PDB Molecule:double clp-n motif protein;
PDBTitle: the structure of arabidopsis clpt1
33c3elfA_



not modelled 31.4 25
PDB header:lyase
Chain: A: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: structural characterization of tetrameric mycobacterium tuberculosis2 fructose 1,6-bisphosphate aldolase - substrate binding and catalysis3 mechanism of a class iia bacterial aldolase
34d1t3va_



not modelled 29.6 15
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
35c5ze4A_



not modelled 28.1 18
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
36c6ez3C_



not modelled 25.8 22
PDB header:rna binding protein
Chain: C: PDB Molecule:cyclo(l-leucyl-l-leucyl) synthase;
PDBTitle: structure of cdps from staphylococcus haemolyticus
37d1o13a_



not modelled 25.4 15
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
38d1mxaa1



not modelled 23.9 23
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
39d1k6ka_



not modelled 22.6 30
Fold:Double Clp-N motif
Superfamily:Double Clp-N motif
Family:Double Clp-N motif
40c2yx6C_



not modelled 22.2 12
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein ph0822;
PDBTitle: crystal structure of ph0822
41d1rdua_



not modelled 21.9 22
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
42c5n5xL_



not modelled 21.5 16
PDB header:transcription
Chain: L: PDB Molecule:rna polymerase i-specific transcription initiation factor
PDBTitle: crystal structure of s. cerevisiae core factor at 3.2a resolution
43c5n5xI_



not modelled 21.5 16
PDB header:transcription
Chain: I: PDB Molecule:rna polymerase i-specific transcription initiation factor
PDBTitle: crystal structure of s. cerevisiae core factor at 3.2a resolution
44d2p02a1



not modelled 20.7 21
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
45c4wwsE_



not modelled 20.3 32
PDB header:oxidoreductase
Chain: E: PDB Molecule:putative heme-dependent peroxidase lmo2113;
PDBTitle: structure of chlorite dismutase-like protein from listeria2 monocytogenes
46d1gvfa_



not modelled 20.2 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
47c5yudA_



not modelled 19.8 33
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: flagellin derivative in complex with the nlr protein naip5
48c5u2lA_



not modelled 19.3 22
PDB header:protein binding
Chain: A: PDB Molecule:heat shock protein 104;
PDBTitle: crystal structure of the hsp104 n-terminal domain from candida2 albicans
49c3iz5Q_



not modelled 18.9 22
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
50c5gkmA_



not modelled 18.9 16
PDB header:chaperone
Chain: A: PDB Molecule:at5g51070/k3k7_27;
PDBTitle: crystal structure of the n-terminal domain of caseinolytic protease2 associated chaperone clpd from arabidopsis thaliana
51d1qm4a1



not modelled 18.7 18
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
52c4y0cB_



not modelled 18.4 19
PDB header:protein binding
Chain: B: PDB Molecule:clp protease-related protein at4g12060, chloroplastic;
PDBTitle: the structure of arabidopsis clpt2
53d2gp4a2



not modelled 18.0 18
Fold:IlvD/EDD N-terminal domain-like
Superfamily:IlvD/EDD N-terminal domain-like
Family:lvD/EDD N-terminal domain-like
54c6b5bA_



not modelled 17.7 33
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: cryo-em structure of the naip5-nlrc4-flagellin inflammasome
55c2wbrA_



not modelled 17.5 31
PDB header:dna-binding protein
Chain: A: PDB Molecule:gw182;
PDBTitle: the rrm domain in gw182 proteins contributes to mirna-2 mediated gene silencing
56d1eo1a_



not modelled 17.5 23
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
57c2gp4A_



not modelled 16.9 14
PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
58c4hn9B_



not modelled 16.4 21
PDB header:transport protein
Chain: B: PDB Molecule:iron complex transport system substrate-binding protein;
PDBTitle: crystal structure of iron abc transporter solute-binding protein from2 eubacterium eligens
59d1t0tv_



not modelled 16.3 27
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Chlorite dismutase-like
60d1uk8a_



not modelled 16.1 20
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carbon-carbon bond hydrolase
61c4lkrA_



not modelled 16.1 23
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of deod-3 gene product from shewanella oneidensis2 mr-1, nysgrc target 029437
62c6hu9r_



not modelled 16.0 22
PDB header:oxidoreductase/electron transport
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
63c4zo3A_



not modelled 15.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:acylhomoserine lactonase;
PDBTitle: aidc, a dizinc quorum-quenching lactonase, in complex with a product2 n-hexnoyl-l-homoserine
64c2dfjA_



not modelled 15.6 31
PDB header:hydrolase
Chain: A: PDB Molecule:diadenosinetetraphosphatase;
PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a
65c3cf4A_



not modelled 15.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
66c2wfbA_



not modelled 15.2 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein orp;
PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas
67c6emwX_



not modelled 14.4 21
PDB header:chaperone
Chain: X: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: structure of s.aureus clpc in complex with meca
68c2oxlA_



not modelled 14.2 21
PDB header:gene regulation
Chain: A: PDB Molecule:hypothetical protein ymgb;
PDBTitle: structure and function of the e. coli protein ymgb: a protein critical2 for biofilm formation and acid resistance
69d1iuka_



not modelled 14.1 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
70c4oc8A_



not modelled 13.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease aspbhi;
PDBTitle: dna modification-dependent restriction endonuclease aspbhi
71d2ac7a1



not modelled 13.9 23
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
72d1p90a_



not modelled 13.6 15
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:Nitrogenase accessory factor
73d1vdha_



not modelled 13.4 23
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Chlorite dismutase-like
74c4m3nA_



not modelled 13.1 18
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of purine nucleoside phosphorylase from meiothermus2 ruber dsm 1279, nysgrc target 029804.
75c4dtfA_



not modelled 13.0 21
PDB header:toxin
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: structure of a vgrg vibrio cholerae toxin acd domain in complex with2 amp-pnp and mg++
76c3qpbB_



not modelled 12.8 25
PDB header:transferase
Chain: B: PDB Molecule:uridine phosphorylase;
PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily
77c5oynB_



not modelled 12.6 14
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
78c4irfA_



not modelled 12.5 10
PDB header:chaperone
Chain: A: PDB Molecule:malarial clpb2 atpase/hsp101 protein;
PDBTitle: preliminary structural investigations of a malarial protein secretion2 system
79c5x56A_



not modelled 12.4 15
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii repair protein psb27-h1, chloroplastic;
PDBTitle: crystal structure of psb27 from arabidopsis thaliana
80c5guiA_



not modelled 12.4 20
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein clpc1, chloroplastic;
PDBTitle: crystal structure of the n-terminal domain of caseinolytic protease2 associated chaperone clpc1 from arabidopsis thaliana
81c2w9mB_



not modelled 12.3 35
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
82c3fh2A_



not modelled 12.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent protease (heat shock protein);
PDBTitle: the crystal structure of the probable atp-dependent protease (heat2 shock protein) from corynebacterium glutamicum
83d1hyua4



not modelled 11.9 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
84c2jz2A_



not modelled 11.9 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
85c4xb6D_



not modelled 11.8 36
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
86d2aioa1



not modelled 11.5 17
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
87c4oe4A_



not modelled 11.4 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:delta-1-pyrroline-5-carboxylate dehydrogenase,
PDBTitle: crystal structure of yeast aldh4a1 complexed with nad+
88c2y69R_



not modelled 11.1 14
PDB header:electron transport
Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
89d1v54e_



not modelled 11.0 14
Fold:alpha-alpha superhelix
Superfamily:Cytochrome c oxidase subunit E
Family:Cytochrome c oxidase subunit E
90c3fz5C_



not modelled 10.9 14
PDB header:isomerase
Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase;
PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides
91c2kmfA_



not modelled 10.7 35
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii 11 kda protein;
PDBTitle: solution structure of psb27 from cyanobacterial photosystem2 ii
92c2r2dC_



not modelled 10.6 30
PDB header:hydrolase
Chain: C: PDB Molecule:zn-dependent hydrolases;
PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens
93d1vhwa_



not modelled 10.6 18
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
94c1xovA_



not modelled 10.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:ply protein;
PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa
95d2ghra1



not modelled 10.5 13
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
96c3c52B_



not modelled 10.4 14
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori2 in complex with phosphoglycolohydroxamic acid, a competitive3 inhibitor
97c1z34A_



not modelled 10.4 18
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine
98c3l4gI_



not modelled 10.2 30
PDB header:ligase
Chain: I: PDB Molecule:phenylalanyl-trna synthetase alpha chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
99c4d98A_



not modelled 10.2 23
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of the hexameric purine nucleoside phosphorylase2 from bacillus subtilis in space group h32 at ph 7.5

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