Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1476_(-)_1666210_1666770
DateFri Aug 2 13:30:05 BST 2019
Unique Job ID9407236113326cb0
SequenceMTGPYFPQTI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.216 Y:33.192 Z:32.352
Model (left) based on template c2kptA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a
Confidence and coverage
Confidence: 82.2% Coverage: 52%
97 residues ( 52% of your sequence) have been modelled with 82.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kptA_
82.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a
2c5dboA_
47.7 16
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
3c6hwhT_
39.9 14
PDB header:electron transport
Chain: T: PDB Molecule:uncharacterized protein msmeg_4692/msmei_4575;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
4c2kw7A_
38.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: solution nmr structure of the n-terminal domain of protein pg_03612 from p.gingivalis, northeast structural genomics consortium target3 pgr37a
5c4zquA_
37.9 8
PDB header:toxin
Chain: A: PDB Molecule:cdia-ct toxin, conserved domain protein;
PDBTitle: cdia-ct/cdii toxin and immunity complex from yersinia2 pseudotuberculosis
6c5anpB_
35.6 9
PDB header:unknown function
Chain: B: PDB Molecule:ba41;
PDBTitle: crystal structure of the ba41 protein from bizionia argentinensis
7c3wrbB_
33.5 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:gallate dioxygenase;
PDBTitle: crystal structure of the anaerobic h124f desb-gallate complex
8c2jx5A_
25.2 21
PDB header:ribosomal protein
Chain: A: PDB Molecule:glub(s27a);
PDBTitle: solution structure of the ubiquitin domain n-terminal to2 the s27a ribosomal subunit of giardia lamblia
9c2rmzA_
23.9 26
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
10c4wpgA_
23.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose reductase;
PDBTitle: group a streptococcus gaca is an essential dtdp-4-dehydrorhamnose2 reductase (rmld)
11c2x3dC_
23.1 21
PDB header:unknown function
Chain: C: PDB Molecule:sso6206;
PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2
12c5vxsF_
22.0 13
PDB header:lyase
Chain: F: PDB Molecule:citrate lyase subunit beta-like protein, mitochondrial;
PDBTitle: crystal structure analysis of human clybl in apo form
13d1gjja1
21.8 25
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
14c5k9xA_
21.7 18
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
15c5lvaA_
21.2 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(p)h-fmn oxidoreductase;
PDBTitle: crystal structure of thermophilic tryptophan halogenase (th-hal)2 enzyme from streptomycin violaceusniger.
16d1rtta_
20.3 11
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
17c5d88A_
19.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:predicted protease of the collagenase family;
PDBTitle: the structure of the u32 peptidase mk0906
18d1ni9a_
18.8 32
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:GlpX-like bacterial fructose-1,6-bisphosphatase
19c4g6uA_
18.2 4
PDB header:toxin
Chain: A: PDB Molecule:ec869 cdia-ct;
PDBTitle: cdia-ct/cdii toxin and immunity complex from escherichia coli
20c4ar0A_
18.1 17
PDB header:transport
Chain: A: PDB Molecule:type iv pilus biogenesis and competence protein pilq;
PDBTitle: n0 domain of neisseria meningitidis pilus assembly protein pilq
21c5ohdB_
not modelled 17.8 22
PDB header:membrane protein
Chain: B: PDB Molecule:growth hormone receptor;
PDBTitle: putative inactive (dormant) dimeric state of ghr transmembrane domain
22c6jdkA_
not modelled 17.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:baeyer-villiger monooxygenase;
PDBTitle: crystal structure of baeyer-villiger monooxygenase from parvibaculum2 lavamentivorans
23c4mozC_
not modelled 17.2 21
PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: fructose-bisphosphate aldolase from slackia heliotrinireducens dsm2 20476
24c2advB_
not modelled 16.9 33
PDB header:hydrolase
Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase;
PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism
25c6an7D_
not modelled 16.3 16
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
26d1h9ea_
not modelled 16.3 25
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
27c5ltwK_
not modelled 16.1 35
PDB header:protein binding
Chain: K: PDB Molecule:heat shock protein beta-6;
PDBTitle: complex of human 14-3-3 sigma clu1 mutant with phosphorylated heat2 shock protein b6
28c2outA_
not modelled 15.0 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mu-like prophage flumu protein gp35, protein
PDBTitle: solution structure of hi1506, a novel two domain protein2 from haemophilus influenzae
29c3f2vA_
not modelled 14.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 14 (tde0354) in2 complex with fmn from treponema denticola, northeast structural3 genomics consortium target tdr58.
30c5b04G_
not modelled 14.4 19
PDB header:translation
Chain: G: PDB Molecule:probable translation initiation factor eif-2b subunit
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
31c6cfwI_
not modelled 13.8 23
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
32c3u7rB_
not modelled 13.5 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent fmn reductase;
PDBTitle: ferb - flavoenzyme nad(p)h:(acceptor) oxidoreductase (ferb) from2 paracoccus denitrificans
33c3q9qB_
not modelled 13.2 30
PDB header:chaperone
Chain: B: PDB Molecule:heat shock protein beta-1;
PDBTitle: hspb1 fragment second crystal form
34c2kncA_
not modelled 13.2 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
35c6f2rT_
not modelled 13.0 20
PDB header:chaperone
Chain: T: PDB Molecule:heat shock protein beta-3,heat shock protein beta-3,heat
PDBTitle: a hetrotetramer of human hspb2 and hspb3
36c5b04B_
not modelled 12.8 13
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
37c3ha2B_
not modelled 12.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-quinone reductase;
PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a
38c2wj7D_
not modelled 12.3 35
PDB header:chaperone
Chain: D: PDB Molecule:alpha-crystallin b chain;
PDBTitle: human alphab crystallin
39c5j7xA_
not modelled 12.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethylaniline monooxygenase, putative;
PDBTitle: baeyer-villiger monooxygenase bvmoafl838 from aspergillus flavus
40c5mq6A_
not modelled 11.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase-like protein;
PDBTitle: polycyclic ketone monooxygenase from the thermophilic fungus2 thermothelomyces thermophila
41c2bolA_
not modelled 11.0 26
PDB header:heat shock protein
Chain: A: PDB Molecule:small heat shock protein;
PDBTitle: crystal structure and assembly of tsp36, a metazoan small heat shock2 protein
42c3a11D_
not modelled 10.8 22
PDB header:isomerase
Chain: D: PDB Molecule:translation initiation factor eif-2b, delta subunit;
PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
43c5m0zA_
not modelled 10.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexanone monooxygenase from thermocrispum municipale.;
PDBTitle: cyclohexanone monooxygenase from t. municipale: reduced enzyme bound2 to nadp+
44c6daqA_
not modelled 10.3 22
PDB header:lyase
Chain: A: PDB Molecule:phdj;
PDBTitle: phdj bound to substrate intermediate
45c1u0kA_
not modelled 10.2 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:gene product pa4716;
PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa
46c6c14A_
not modelled 10.2 7
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
47c1gjjA_
not modelled 9.9 25
PDB header:membrane protein
Chain: A: PDB Molecule:lap2;
PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2
48c2lt2A_
not modelled 9.8 12
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr structure of ba42 protein from the psychrophilic bacteria bizionia2 argentinensis sp. nov.
49c2y9kG_
not modelled 9.7 11
PDB header:protein transport
Chain: G: PDB Molecule:protein invg;
PDBTitle: three-dimensional model of salmonella's needle complex at subnanometer2 resolution
50c4n6hA_
not modelled 9.7 10
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, delta-type opioid receptor
PDBTitle: 1.8 a structure of the human delta opioid 7tm receptor (psi community2 target)
51c5tchG_
not modelled 9.6 11
PDB header:lyase
Chain: G: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase from m. tuberculosis -2 ligand-free form, trpa-g66v mutant
52c4b9zA_
not modelled 9.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase, putative, adg31b;
PDBTitle: crystal structure of agd31b, alpha-transglucosylase,2 complexed with acarbose
53c2ks1B_
not modelled 9.4 21
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
54d1xuba1
not modelled 9.2 22
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
55d3bpda1
not modelled 9.2 17
Fold:Ferredoxin-like
Superfamily:MTH889-like
Family:MTH889-like
56c1spfA_
not modelled 9.2 35
PDB header:lipoprotein(surface film)
Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c;
PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix
57c3vsjA_
not modelled 9.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit;
PDBTitle: crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
58c1w4xA_
not modelled 9.1 9
PDB header:oxygenase
Chain: A: PDB Molecule:phenylacetone monooxygenase;
PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
59d1w4xa2
not modelled 9.0 9
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
60c3uclA_
not modelled 8.9 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexanone monooxygenase;
PDBTitle: cyclohexanone-bound crystal structure of cyclohexanone monooxygenase2 in the rotated conformation
61c6an7C_
not modelled 8.7 14
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
62c2kncB_
not modelled 8.5 26
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
63d2raqa1
not modelled 8.5 17
Fold:Ferredoxin-like
Superfamily:MTH889-like
Family:MTH889-like
64c2e7zA_
not modelled 8.4 18
PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
65c6dv5T_
not modelled 8.3 30
PDB header:chaperone
Chain: T: PDB Molecule:heat shock protein beta-1;
PDBTitle: oligomeric complex of a hsp27 24-mer at 3.6 a resolution
66c5zazA_
not modelled 8.3 26
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
67c4zeoH_
not modelled 8.1 17
PDB header:translation
Chain: H: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of eif2b delta from chaetomium thermophilum
68c2n2aA_
not modelled 8.1 17
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
69c3uoyB_
not modelled 8.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:otemo;
PDBTitle: crystal structure of otemo complex with fad and nadp (form 1)
70c3gwdA_
not modelled 8.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexanone monooxygenase;
PDBTitle: closed crystal structure of cyclohexanone monooxygenase
71c6f2rA_
not modelled 7.9 37
PDB header:chaperone
Chain: A: PDB Molecule:hspb2,heat shock protein beta-2,heat shock protein beta-2,
PDBTitle: a hetrotetramer of human hspb2 and hspb3
72c2d0gA_
not modelled 7.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
73d1pdoa_
not modelled 7.9 14
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
74c6ezoH_
not modelled 7.8 21
PDB header:membrane protein
Chain: H: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
75c2k74A_
not modelled 7.7 14
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
76c3fpvC_
not modelled 7.7 22
PDB header:heme binding protein
Chain: C: PDB Molecule:extracellular haem-binding protein;
PDBTitle: crystal structure of hbps
77c2bbjB_
not modelled 7.7 15
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
78c6bwsA_
not modelled 7.6 17
PDB header:unknown function
Chain: A: PDB Molecule:glycolate utilization protein;
PDBTitle: crystal structure of efga from methylobacterium extorquens
79d2gm3a1
not modelled 7.3 16
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
80c3gxxB_
not modelled 7.3 8
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt6;
PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b
81c2kluA_
not modelled 7.3 13
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
82c4ap3A_
not modelled 7.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:steroid monooxygenase;
PDBTitle: oxidized steroid monooxygenase bound to nadp
83c2klrA_
not modelled 7.1 37
PDB header:chaperone
Chain: A: PDB Molecule:alpha-crystallin b chain;
PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers
84d1ydga_
not modelled 7.1 15
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
85c2k9yA_
not modelled 7.0 17
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
86c2k9yB_
not modelled 7.0 17
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
87c2z2uA_
not modelled 7.0 21
PDB header:metal binding protein
Chain: A: PDB Molecule:upf0026 protein mj0257;
PDBTitle: crystal structure of archaeal tyw1
88c5ey5A_
not modelled 6.9 18
PDB header:lyase
Chain: A: PDB Molecule:lbcats-a;
PDBTitle: lbcats
89c2fpgA_
not modelled 6.9 18
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain,
PDBTitle: crystal structure of pig gtp-specific succinyl-coa synthetase in2 complex with gdp
90c3ju7B_
not modelled 6.7 10
PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
91c6f2rE_
not modelled 6.7 37
PDB header:chaperone
Chain: E: PDB Molecule:hspb2,heat shock protein beta-2,heat shock protein beta-2,
PDBTitle: a hetrotetramer of human hspb2 and hspb3
92c6f2rI_
not modelled 6.7 37
PDB header:chaperone
Chain: I: PDB Molecule:hspb2,heat shock protein beta-2,heat shock protein beta-2,
PDBTitle: a hetrotetramer of human hspb2 and hspb3
93c3ptjA_
not modelled 6.6 10
PDB header:hydrolase
Chain: A: PDB Molecule:upf0603 protein at1g54780, chloroplastic;
PDBTitle: structural and functional analysis of arabidopsis thaliana thylakoid2 lumen protein attlp18.3
94d1f61a_
not modelled 6.6 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
95c3qphA_
not modelled 6.4 11
PDB header:transcription
Chain: A: PDB Molecule:trmb, a global transcription regulator;
PDBTitle: the three-dimensional structure of trmb, a global transcriptional2 regulator of the hyperthermophilic archaeon pyrococcus furiosus in3 complex with sucrose
96c5d6aA_
not modelled 6.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase of the abc class;
PDBTitle: 2.7 angstrom crystal structure of abc transporter atpase from vibrio2 vulnificus in complex with adenylyl-imidodiphosphate (amp-pnp)
97c2l8sA_
not modelled 6.4 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
98c3e96B_
not modelled 6.1 9
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bacillus2 clausii
99d2j8xa1
not modelled 6.0 31
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase

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Transmembrane helix prediction 

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