Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1480_(-)_1670419_1671372
DateFri Aug 2 13:30:06 BST 2019
Unique Job IDb690f627e68e99c3
SequenceVTESKAPAVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.820 Y:59.667 Z:35.664
Model (left) based on template c3ibsA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein batb;
PDBTitle: crystal structure of conserved hypothetical protein batb from2 bacteroides thetaiotaomicron
Confidence and coverage
Confidence: 99.2% Coverage: 63%
199 residues ( 63% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ibsA_



99.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein batb;
PDBTitle: crystal structure of conserved hypothetical protein batb from2 bacteroides thetaiotaomicron
2c4fx5A_



99.1 13
PDB header:blood clotting
Chain: A: PDB Molecule:von willebrand factor type a;
PDBTitle: von willebrand factor type a from catenulispora acidiphila
3c6nmiE_



98.9 13
PDB header:transcription
Chain: E: PDB Molecule:general transcription factor iih subunit 2, p44;
PDBTitle: cryo-em structure of the human tfiih core complex
4c6fpzA_



98.9 10
PDB header:structural protein
Chain: A: PDB Molecule:inter-alpha-trypsin inhibitor heavy chain h1;
PDBTitle: inter-alpha-inhibitor heavy chain 1, d298a
5c6o9l6_



98.8 14
PDB header:transcription/dna
Chain: 6: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the closed state
6c5oqj6_



98.6 14
PDB header:transcription
Chain: 6: PDB Molecule:suppressor of stem-loop protein 1;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
7c4rckB_



98.6 16
PDB header:membrane protein
Chain: B: PDB Molecule:hypothetical membrane spanning protein;
PDBTitle: crystal structure of uncharacterized membrane spanning protein from2 vibrio fischeri
8c2nvoA_



98.6 15
PDB header:rna binding protein
Chain: A: PDB Molecule:ro sixty-related protein, rsr;
PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein
9d1yvra2



98.5 13
Fold:vWA-like
Superfamily:vWA-like
Family:RoRNP C-terminal domain-like
10c5a8jA_



98.4 16
PDB header:transcription
Chain: A: PDB Molecule:vwa2;
PDBTitle: crystal structure of the arnb paralog vwa2 from2 sulfolobus acidocaldarius
11c4b4tW_



98.4 16
PDB header:hydrolase
Chain: W: PDB Molecule:26s proteasome regulatory subunit rpn10;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
12c4wfqA_



98.4 11
PDB header:transcription
Chain: A: PDB Molecule:suppressor of stem-loop protein 1;
PDBTitle: crystal structure of tfiih subunit
13c2x31F_



98.4 14
PDB header:ligase
Chain: F: PDB Molecule:magnesium-chelatase 60 kda subunit;
PDBTitle: modelling of the complex between subunits bchi and bchd of magnesium2 chelatase based on single-particle cryo-em reconstruction at 7.5 ang
14c5gjqW_



98.3 13
PDB header:hydrolase
Chain: W: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
15c5iy70_



98.3 16
PDB header:transcription, transferase/dna
Chain: 0: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the open state
16d1jeyb2



98.3 9
Fold:vWA-like
Superfamily:vWA-like
Family:Ku80 subunit N-terminal domain
17c2x5nA_



98.3 14
PDB header:nuclear protein
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn10;
PDBTitle: crystal structure of the sprpn10 vwa domain
18c1rs0A_



98.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:complement factor b;
PDBTitle: crystal structure analysis of the bb segment of factor b2 complexed with di-isopropyl-phosphate (dip)
19d1jeya2



98.2 9
Fold:vWA-like
Superfamily:vWA-like
Family:Ku70 subunit N-terminal domain
20c2i6sA_



98.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:complement c2a fragment;
PDBTitle: complement component c2a
21c5gjvF_



not modelled 98.1 15
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent calcium channel subunit alpha-2/delta-1;
PDBTitle: structure of the mammalian voltage-gated calcium channel cav1.12 complex at near atomic resolution
22c3jbrF_



not modelled 98.0 11
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent calcium channel subunit alpha-2/delta-1;
PDBTitle: cryo-em structure of the rabbit voltage-gated calcium channel cav1.12 complex at 4.2 angstrom
23c2iueA_



not modelled 98.0 10
PDB header:membrane protein
Chain: A: PDB Molecule:pactolus i-domain;
PDBTitle: pactolus i-domain: functional switching of the rossmann2 fold
24c2ok5A_



not modelled 97.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:complement factor b;
PDBTitle: human complement factor b
25c4cnbA_



not modelled 97.7 16
PDB header:structural protein
Chain: A: PDB Molecule:proximal thread matrix protein 1;
PDBTitle: structure of proximal thread matrix protein 1 (ptmp1) from the2 mussel byssus - crystal form 2
26c4hqnB_



not modelled 97.7 12
PDB header:cell adhesion
Chain: B: PDB Molecule:sporozoite surface protein 2;
PDBTitle: crystal structure of manganese-loaded plasmodium vivax trap protein
27c4okuA_



not modelled 97.7 7
PDB header:cell adhesion
Chain: A: PDB Molecule:micronemal protein mic2;
PDBTitle: structure of toxoplasma gondii promic2
28c3n2nC_



not modelled 97.6 12
PDB header:toxin receptor
Chain: C: PDB Molecule:anthrax toxin receptor 1;
PDBTitle: the crystal structure of tumor endothelial marker 8 (tem8)2 extracellular domain
29d2ok5a1



not modelled 97.6 14
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
30d1pd0a3



not modelled 97.3 14
Fold:vWA-like
Superfamily:vWA-like
Family:Trunk domain of Sec23/24
31c1jeyB_



not modelled 97.3 7
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:ku80;
PDBTitle: crystal structure of the ku heterodimer bound to dna
32c5e6rA_



not modelled 97.3 12
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-l;
PDBTitle: structures of leukocyte integrin alb2: the ai domain, the headpiece,2 and the pocket for the internal ligand
33c6bxjA_



not modelled 97.3 14
PDB header:cell adhesion
Chain: A: PDB Molecule:chimera protein of integrin beta-3 and integrin alpha-l;
PDBTitle: structure of a single-chain beta3 integrin
34c3txaA_



not modelled 97.3 14
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
35c1yvrA_



not modelled 97.2 14
PDB header:rna binding protein
Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein;
PDBTitle: ro autoantigen
36d1shux_



not modelled 97.1 14
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
37c6bxfA_



not modelled 97.1 14
PDB header:cell adhesion
Chain: A: PDB Molecule:chimera protein of integrin beta-3 and integrin alpha-l;
PDBTitle: crystal structure of an extended b3 integrin l33
38c2b2xB_



not modelled 97.1 11
PDB header:immune system
Chain: B: PDB Molecule:integrin alpha-1;
PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab
39c2xggB_



not modelled 97.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:microneme protein 2;
PDBTitle: structure of toxoplasma gondii micronemal protein 2 a_i2 domain
40d1q0pa_



not modelled 96.8 19
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
41c6djpB_



not modelled 96.5 9
PDB header:membrane protein
Chain: B: PDB Molecule:integrin beta-8;
PDBTitle: integrin alpha-v beta-8 in complex with the fabs 8b8 and 68
42c3tw0D_



not modelled 96.5 13
PDB header:cell adhesion
Chain: D: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
43d1ck4a_



not modelled 96.5 10
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
44d1v7pc_



not modelled 96.5 13
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
45d1pt6a_



not modelled 96.3 11
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
46d1atza_



not modelled 96.0 15
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
47c4ihkA_



not modelled 95.8 11
PDB header:cell adhesion
Chain: A: PDB Molecule:collagen alpha3(vi);
PDBTitle: crystal structure of the collagen vi alpha3 n5 domain r1061q
48c1jeqA_



not modelled 95.6 11
PDB header:dna binding protein
Chain: A: PDB Molecule:ku70;
PDBTitle: crystal structure of the ku heterodimer
49c5y58E_



not modelled 95.5 6
PDB header:rna binding protein
Chain: E: PDB Molecule:atp-dependent dna helicase ii subunit 1;
PDBTitle: crystal structure of ku70/80 and tlc1
50c3vi3D_



not modelled 95.3 13
PDB header:cell adhesion/immune system
Chain: D: PDB Molecule:integrin beta-1;
PDBTitle: crystal structure of alpha5beta1 integrin headpiece (ligand-free form)
51d1tyeb2



not modelled 94.7 11
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
52d1mjna_



not modelled 94.7 14
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
53c4um9D_



not modelled 94.7 15
PDB header:immune system
Chain: D: PDB Molecule:integrin beta-6;
PDBTitle: crystal structure of alpha v beta 6 with peptide
54c3ragA_



not modelled 94.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
55c4hqfA_



not modelled 94.5 17
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-related anonymous protein, trap;
PDBTitle: crystal structure of plasmodium falciparum trap, i4 form
56c3gxbB_



not modelled 94.2 11
PDB header:cell adhesion
Chain: B: PDB Molecule:von willebrand factor;
PDBTitle: crystal structure of vwf a2 domain
57c3fcuB_



not modelled 93.8 11
PDB header:cell adhesion/blood clotting
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: structure of headpiece of integrin aiibb3 in open conformation
58d1u0oc1



not modelled 93.8 11
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
59c3v4pB_



not modelled 93.6 16
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-7;
PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1
60d1ijba_



not modelled 92.8 11
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
61d1mf7a_



not modelled 92.4 5
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
62d1n3ya_



not modelled 91.4 11
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
63c1u8cB_



not modelled 86.5 13
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure
64c6nmiF_



not modelled 85.1 14
PDB header:transcription
Chain: F: PDB Molecule:general transcription factor iih subunit 3, p34;
PDBTitle: cryo-em structure of the human tfiih core complex
65c3ijeB_



not modelled 84.4 12
PDB header:protein binding
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: crystal structure of the complete integrin alhavbeta3 ectodomain plus2 an alpha/beta transmembrane fragment
66c5y59B_



not modelled 84.1 14
PDB header:protein binding
Chain: B: PDB Molecule:atp-dependent dna helicase ii subunit 2;
PDBTitle: crystal structure of ku80 and sir4
67c5y58D_



not modelled 81.9 18
PDB header:rna binding protein
Chain: D: PDB Molecule:atp-dependent dna helicase ii subunit 2;
PDBTitle: crystal structure of ku70/80 and tlc1
68c1pd0A_



not modelled 74.0 18
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)
69c3k6sB_



not modelled 65.1 9
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-2;
PDBTitle: structure of integrin alphaxbeta2 ectodomain
70c6gvwD_



not modelled 59.7 5
PDB header:signaling protein
Chain: D: PDB Molecule:brisc and brca1-a complex member 1;
PDBTitle: crystal structure of the brca1-a complex
71c3eh2B_



not modelled 55.1 17
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24c;
PDBTitle: crystal structure of the human copii-coat protein sec24c
72c4pn7A_



not modelled 51.3 12
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of the tfiih p34 n-terminal domain
73c3eg9B_



not modelled 46.3 18
PDB header:protein transport
Chain: B: PDB Molecule:sec24 related gene family, member d;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23/24 bound2 to the transport signal sequence of membrin
74c4zy8D_



not modelled 24.0 19
PDB header:transport protein
Chain: D: PDB Molecule:protein lst4;
PDBTitle: k. lactis lst4 longin domain
75d1np7a2



not modelled 21.8 15
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
76d1chma1



not modelled 21.8 11
Fold:Ribonuclease H-like motif
Superfamily:Creatinase/prolidase N-terminal domain
Family:Creatinase/prolidase N-terminal domain
77c1m2vB_



not modelled 21.8 19
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the yeast sec23/24 heterodimer
78d1owla2



not modelled 20.3 17
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
79c4v34A_



not modelled 18.7 13
PDB header:transferase
Chain: A: PDB Molecule:alanyl-trna-dependent l-alanyl- phophatidylglycerol
PDBTitle: the structure of a-pgs from pseudomonas aeruginosa (semet derivative)
80c3egxB_



not modelled 18.1 12
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24a;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23a/24a2 complexed with the snare protein sec22b and bound to the transport3 signal sequence of the snare protein bet1
81c2z4lC_



not modelled 16.7 16
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with paromomycin and ribosome recycling factor (rrf). this3 file contains the 50s subunit of the first 70s ribosome, with4 paromomycin and rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400.
82c1m2oA_



not modelled 16.3 12
PDB header:protein transport/signaling protein
Chain: A: PDB Molecule:protein transport protein sec23;
PDBTitle: crystal structure of the sec23-sar1 complex
83d2qtva3



not modelled 16.3 15
Fold:vWA-like
Superfamily:vWA-like
Family:Trunk domain of Sec23/24
84c5oqj4_



not modelled 15.5 12
PDB header:transcription
Chain: 4: PDB Molecule:rna polymerase ii transcription factor b subunit 4;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
85c5iy63_



not modelled 12.3 12
PDB header:transcription, transferase/dna
Chain: 3: PDB Molecule:general transcription factor iih subunit 3;
PDBTitle: human holo-pic in the closed state
86c3s29C_



not modelled 11.7 10
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
87d1rl2a2



not modelled 10.9 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
88c5es8A_



not modelled 10.1 13
PDB header:ligase
Chain: A: PDB Molecule:linear gramicidin synthetase subunit a;
PDBTitle: crystal structure of the initiation module of lgra in the thiolation2 state
89d1q77a_



not modelled 10.1 11
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
90c6mrrA_



not modelled 9.7 17
PDB header:de novo protein
Chain: A: PDB Molecule:foldit1;
PDBTitle: de novo designed protein foldit1
91c3kyzA_



not modelled 9.4 24
PDB header:transferase
Chain: A: PDB Molecule:sensor protein pfes;
PDBTitle: the crystal structure of the sensor domain of two-component2 sensor pfes from pseudomonas aeruginosa pa01
92c5d0nA_



not modelled 9.1 9
PDB header:transferase
Chain: A: PDB Molecule:pyruvate, phosphate dikinase regulatory protein,
PDBTitle: crystal structure of maize pdrp bound with amp
93c5udwB_



not modelled 8.1 21
PDB header:transferase
Chain: B: PDB Molecule:lactate racemization operon protein lare;
PDBTitle: lare, a sulfur transferase involved in synthesis of the cofactor for2 lactate racemase, in complex with nickel
94c2rrlA_



not modelled 8.0 11
PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik
95d2zjra2



not modelled 8.0 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
96d1kr4a_



not modelled 7.9 10
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
97c4yhwA_



not modelled 7.7 6
PDB header:splicing
Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: yeast prp3 (296-469) in complex with fragment of u4/u6 di-snrna
98c3qocD_



not modelled 7.6 3
PDB header:hydrolase
Chain: D: PDB Molecule:putative metallopeptidase;
PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae
99c2wfbA_



not modelled 7.6 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein orp;
PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas

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