Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1482c_(-)_1672463_1673305
DateFri Aug 2 13:30:06 BST 2019
Unique Job ID7d777ea18572e006
SequenceMTDPFLGSEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.948 Y:42.448 Z:35.937
Model (left) based on template c3r3pB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:mobile intron protein;
PDBTitle: homing endonuclease i-bth0305i catalytic domain
Confidence and coverage
Confidence: 99.5% Coverage: 33%
92 residues ( 33% of your sequence) have been modelled with 99.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3r3pB_



99.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:mobile intron protein;
PDBTitle: homing endonuclease i-bth0305i catalytic domain
2c3hrlA_



99.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:endonuclease-like protein;
PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae
3d1cw0a_



99.0 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
4d1vsra_



97.5 23
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
5c4oq2A_



96.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease pvurts1 i;
PDBTitle: 5hmc specific restriction endonuclease pvurts1i
6c4parC_



96.0 26
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:uncharacterized protein abasi;
PDBTitle: the 5-hydroxymethylcytosine-specific restriction enzyme abasi in a2 complex with product-like dna
7c6rdu2_



94.8 17
PDB header:proton transport
Chain: 2: PDB Molecule:asa-2: polytomella f-atp synthase associated subunit 2;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
8d1m0da_



88.8 14
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Endonuclease I (Holliday junction resolvase)
9d1zela2



83.0 19
Fold:Rv2827c C-terminal domain-like
Superfamily:Rv2827c C-terminal domain-like
Family:Rv2827c C-terminal domain-like
10c1zelA_



76.8 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2827c;
PDBTitle: crystal structure of rv2827c protein from mycobacterium tuberculosis
11d2fcla1



47.6 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:TM1012-like
12d2ieaa2



35.3 15
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
13c4gqzB_



31.5 16
PDB header:metal binding protein
Chain: B: PDB Molecule:putative periplasmic or exported protein;
PDBTitle: crystal structure of s.cuep
14c4ytkA_



21.5 27
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow1-linker1 domain of transcription elongation2 factor spt5
15c3wbzD_



16.1 16
PDB header:transferase
Chain: D: PDB Molecule:likely histidyl trna-specific guanylyltransferase;
PDBTitle: crystal structure of c. albicans trna(his) guanylyltransferase (thg1)2 with atp
16c5xoxD_



15.9 16
PDB header:transferase
Chain: D: PDB Molecule:trna(his) guanylyltransferase;
PDBTitle: crystal structure of trna(his) guanylyltranserase from saccharomyces2 cerevisiae
17c3otbB_



15.0 21
PDB header:transferase
Chain: B: PDB Molecule:trna(his) guanylyltransferase;
PDBTitle: crystal structure of human trnahis guanylyltransferase (thg1) - dgtp2 complex
18c4kgkB_



12.1 24
PDB header:transferase
Chain: B: PDB Molecule:thg1-like uncharacterized protein;
PDBTitle: bacterial trna(his) guanylyltransferase (thg1)-like protein in complex2 with gtp
19d2fuka1



7.8 16
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Atu1826-like
20c5n35A_



7.0 30
PDB header:polymerase binding protein
Chain: A: PDB Molecule:polb1 binding protein 2 (pbp2);
PDBTitle: gadolinium phased pbp2 (sso6202) at 2.2 ang
21c2kvcA_



not modelled 7.0 28
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
22d1dj0a_



not modelled 6.9 31
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
23d1ccwa_



not modelled 6.4 17
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
24d2csba2



not modelled 6.2 42
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
25d3bula2



not modelled 6.0 17
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
26c1qmoG_



not modelled 6.0 67
PDB header:lectin
Chain: G: PDB Molecule:mannose binding lectin, fril;
PDBTitle: structure of fril, a legume lectin that delays hematopoietic2 progenitor maturation
27d1xi8a3



not modelled 5.9 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
28c3bd0D_



not modelled 5.7 9
PDB header:peptide binding protein
Chain: D: PDB Molecule:protein memo1;
PDBTitle: crystal structure of memo, form ii
29d1fmfa_



not modelled 5.7 21
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
30c2xxsA_



not modelled 5.6 44
PDB header:protein binding
Chain: A: PDB Molecule:protein mxig;
PDBTitle: solution structure of the n-terminal domain of the shigella2 type iii secretion protein mxig
31d2hjja1



not modelled 5.5 40
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YkfF-like
32c2hjjA_



not modelled 5.5 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ykff;
PDBTitle: solution nmr structure of protein ykff from escherichia coli.2 northeast structural genomics target er397.
33c4qoyC_



not modelled 5.5 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase e1 component;
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
34d1y88a2



not modelled 5.5 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:MRR-like
35c5axlB_



not modelled 5.5 27
PDB header:transferase
Chain: B: PDB Molecule:trna(his)-5'-guanylyltransferase (thg1) like protein;
PDBTitle: crystal structure of thg1 like protein (tlp) with gtp
36c3ahhA_



not modelled 5.4 18
PDB header:lyase
Chain: A: PDB Molecule:xylulose 5-phosphate/fructose 6-phosphate phosphoketolase;
PDBTitle: h142a mutant of phosphoketolase from bifidobacterium breve complexed2 with acetyl thiamine diphosphate
37c2mn4A_



not modelled 5.4 17
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
38c4mp4B_



not modelled 5.3 17
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase;
PDBTitle: crystal structure of a glutathione transferase family member from2 acinetobacter baumannii, target efi-501785, apo structure
39d7reqa2



not modelled 5.2 17
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
40c1y80A_



not modelled 5.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from moorella2 thermoacetica

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