Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1487_(-)_1676947_1677381
DateFri Aug 2 13:30:07 BST 2019
Unique Job ID238b6a18283855c4
SequenceMPVALIWLIA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.240 Y:21.878 Z:23.376
Model (left) based on template c3cp0A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane
PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum
Confidence and coverage
Confidence: 99.5% Coverage: 42%
60 residues ( 42% of your sequence) have been modelled with 99.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cp0A_



99.5 43
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane
PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum
2c2k5hA_



99.5 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a
3c3wwvA_



99.4 31
PDB header:unknown function
Chain: A: PDB Molecule:stomatin operon partner protein;
PDBTitle: c-terminal domain of stomatin operon partner protein 1510-c from2 pyrococcus horikoshii
4d2exda1



99.4 32
Fold:OB-fold
Superfamily:NfeD domain-like
Family:NfeD domain-like
5c2k14A_



99.0 26
PDB header:unknown function
Chain: A: PDB Molecule:yuaf protein;
PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis
6c4xi7A_



65.0 16
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mzm-rep domains of mind bomb 1 in complex2 with jagged1 n-box peptide
7c4tseA_



57.0 16
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mib repeat domain of mind bomb 1
8d1tkea1



53.1 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
9c5z81A_



35.0 40
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 15;
PDBTitle: trimeric structure of vibrio cholerae heat shock protein 15 at 2.32 angstrom resolution
10d1dm9a_



34.5 29
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Heat shock protein 15 kD
11c1dm9A_



34.5 29
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka intergenic
PDBTitle: heat shock protein 15 kd
12d1k25a2



33.3 3
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
13d1nyra2



32.1 30
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
14c1ywkE_



31.7 14
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
15c3e0eA_



30.4 23
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
16d1vioa2



29.6 15
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
17c6i52B_



28.3 25
PDB header:dna binding protein
Chain: B: PDB Molecule:replication factor a protein 2;
PDBTitle: yeast rpa bound to ssdna
18d1v43a2



27.7 24
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
19d1ywka1



26.1 14
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
20d1xrua1



25.5 18
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
21d1nnxa_



not modelled 23.4 26
Fold:OB-fold
Superfamily:Hypothetical protein YgiW
Family:Hypothetical protein YgiW
22d1tygb_



not modelled 20.4 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
23c1wwtA_



not modelled 19.8 22
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic;
PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
24c2k6pA_



not modelled 19.7 28
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein hp_1423;
PDBTitle: solution structure of hypothetical protein, hp1423
25c2rcnA_



not modelled 19.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:probable gtpase engc;
PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium.
26c2kmmA_



not modelled 18.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'-
PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481)
27d1p9ka_



not modelled 18.5 35
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
28d1qbaa2



not modelled 17.8 22
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Bacterial chitobiase, n-terminal domain
29c2yv5A_



not modelled 16.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:yjeq protein;
PDBTitle: crystal structure of yjeq from aquifex aeolicus
30c3fjsC_



not modelled 16.6 18
PDB header:biosynthetic protein
Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold;
PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
31c2nv4A_



not modelled 16.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0066 protein af_0241;
PDBTitle: crystal structure of upf0066 protein af0241 in complex with2 s-adenosylmethionine. northeast structural genomics3 consortium target gr27
32c1tygG_



not modelled 15.9 13
PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
33d2gcxa1



not modelled 15.8 13
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
34d1oxxk1



not modelled 15.6 13
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
35c2d49A_



not modelled 15.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: solution structure of the chitin-binding domain of2 streptomyces griseus chitinase c
36d1psea_



not modelled 15.4 21
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
37d1ydla1



not modelled 15.0 19
Fold:TFB5-like
Superfamily:TFB5-like
Family:TFB5-like
38d1g2914



not modelled 15.0 12
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
39c4y2wA_



not modelled 14.4 21
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 1;
PDBTitle: crystal structure of a thermostable alanine racemase from2 thermoanaerobacter tengcongensis mb4
40c5uz4Z_



not modelled 14.4 24
PDB header:ribosome/hydrolase
Chain: Z: PDB Molecule:small ribosomal subunit biogenesis gtpase rsga;
PDBTitle: the cryo-em structure of yjeq bound to the 30s subunit suggests a2 fidelity checkpoint function for this protein in ribosome assembly
41d1kk8a1



not modelled 14.0 43
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
42c4n6eB_



not modelled 13.9 13
PDB header:lyase/biosynthetic protein
Chain: B: PDB Molecule:this/moad family protein;
PDBTitle: crystal structure of amycolatopsis orientalis bexx/cyso complex
43d1tq5a1



not modelled 13.8 14
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Pirin-like
44d1zud21



not modelled 13.6 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
45c4gopB_



not modelled 13.4 23
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
46d1j3ta_



not modelled 13.2 15
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
47d1u0la1



not modelled 13.2 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
48d1goia1



not modelled 13.2 33
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
49c2lclA_



not modelled 13.0 33
PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator rfah;
PDBTitle: solution structure of rfah carboxyterminal domain
50c2kl0A_



not modelled 12.9 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
51c2kncA_



not modelled 12.9 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
52d1ueba3



not modelled 12.8 36
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
53d1jb0e_



not modelled 12.8 14
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
54c1zuyB_



not modelled 12.6 8
PDB header:contractile protein
Chain: B: PDB Molecule:myosin-5 isoform;
PDBTitle: high-resolution structure of yeast myo5 sh3 domain
55d2c35b1



not modelled 12.6 5
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
56c2jvvA_



not modelled 12.3 50
PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of e. coli nusg carboxyterminal domain
57c2kvqG_



not modelled 12.3 50
PDB header:transcription
Chain: G: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of nuse:nusg-ctd complex
58d2fo0a1



not modelled 12.2 10
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
59d1aiwa_



not modelled 12.1 25
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
60c5xg9A_



not modelled 12.0 19
PDB header:contractile protein
Chain: A: PDB Molecule:unconventional myosin ib;
PDBTitle: crystal structure of peg-bound sh3 domain of myosin ib from entamoeba2 histolytica
61c3cwiA_



not modelled 11.8 33
PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
62d2v1ra1



not modelled 11.5 8
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
63d1wgka_



not modelled 11.4 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:C9orf74 homolog
64d1yfba1



not modelled 11.4 14
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
65d2pi2a1



not modelled 11.3 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
66d1lr5a_



not modelled 11.3 6
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
67c3ilaG_



not modelled 11.0 17
PDB header:signaling protein
Chain: G: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal structure of rabbit ryanodine receptor 1 n-terminal domain (9-2 205)
68c1ri9A_



not modelled 10.9 28
PDB header:signaling protein
Chain: A: PDB Molecule:fyn-binding protein;
PDBTitle: structure of a helically extended sh3 domain of the t cell2 adapter protein adap
69d1ri9a_



not modelled 10.9 28
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
70c3dh3C_



not modelled 10.8 48
PDB header:isomerase/rna
Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of rluf in complex with a 22 nucleotide rna2 substrate
71c2p0pA_



not modelled 10.8 10
PDB header:metal binding protein
Chain: A: PDB Molecule:alr1010 protein;
PDBTitle: calcium binding protein in the free form
72c2pi2A_



not modelled 10.8 18
PDB header:replication, dna binding protein
Chain: A: PDB Molecule:replication protein a 32 kda subunit;
PDBTitle: full-length replication protein a subunits rpa14 and rpa32
73d1qp3a_



not modelled 10.8 14
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
74c6hwhX_



not modelled 10.8 14
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
75c2mrnB_



not modelled 10.7 10
PDB header:dna binding protein
Chain: B: PDB Molecule:antitoxin maze;
PDBTitle: structure of truncated ecmaze
76c2vldA_



not modelled 10.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi
77c4esnB_



not modelled 10.7 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1312 family protein (rumgna_02503) from2 ruminococcus gnavus atcc 29149 at 2.20 a resolution
78c2k9xA_



not modelled 10.6 22
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of urm1 from trypanosoma brucei
79c5o5jI_



not modelled 10.6 50
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s9;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
80d1nppa2



not modelled 10.5 55
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
81c2nchA_



not modelled 10.4 20
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor if1 from wolbachia2 endosymbiont strain trs of brugia malayi
82c1pyuD_



not modelled 10.3 22
PDB header:lyase
Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain;
PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
83c2rtsA_



not modelled 10.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: chitin binding domain1
84c2istA_



not modelled 10.3 15
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: crystal structure of rlud from e. coli
85c3j20K_



not modelled 10.0 24
PDB header:ribosome
Chain: K: PDB Molecule:30s ribosomal protein s9p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
86c2qjlA_



not modelled 10.0 19
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin-related modifier 1;
PDBTitle: crystal structure of urm1
87c2lx7A_



not modelled 10.0 19
PDB header:protein binding
Chain: A: PDB Molecule:growth arrest-specific protein 7;
PDBTitle: solution nmr structure of sh3 domain of growth arrest-specific protein2 7 (gas7) (fragment 1-60) from homo sapiens, northeast structural3 genomics consortium (nesg) target hr8574a
88d2h3ja1



not modelled 9.9 18
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
89c3hvzB_



not modelled 9.8 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a
90c3okxA_



not modelled 9.8 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yaeb-like protein rpa0152;
PDBTitle: crystal structure of yaeb-like protein from rhodopseudomonas palustris
91d1xo3a_



not modelled 9.8 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:C9orf74 homolog
92d1mvfd_



not modelled 9.8 10
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
93d1nz9a_



not modelled 9.7 55
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
94d1pyya2



not modelled 9.6 10
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
95d2do3a1



not modelled 9.6 42
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
96d1uhfa_



not modelled 9.4 22
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
97d2cdea1



not modelled 9.4 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
98c4a1cS_



not modelled 9.3 20
PDB header:ribosome
Chain: S: PDB Molecule:rpl26;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
99c5xyiQ_



not modelled 9.3 29
PDB header:ribosome
Chain: Q: PDB Molecule:40s ribosomal protein s16, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below