Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1488_(-)_1677403_1678548
DateFri Aug 2 13:30:07 BST 2019
Unique Job ID6deec3722d6d0438
SequenceVQGAVAGLVF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.583 Y:50.676 Z:93.096
Model (left) based on template c3bk6C_
Top template information
PDB header:membrane protein
Chain: C: PDB Molecule:ph stomatin;
PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii
Confidence and coverage
Confidence: 99.9% Coverage: 41%
157 residues ( 41% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
321 residues ( 84%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bk6C_
99.9 39
PDB header:membrane protein
Chain: C: PDB Molecule:ph stomatin;
PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii
2d1wina_
99.7 20
Fold:EF-Ts domain-like
Superfamily:Band 7/SPFH domain
Family:Band 7/SPFH domain
3c4fvjB_
99.7 38
PDB header:membrane protein
Chain: B: PDB Molecule:stomatin;
PDBTitle: spfh domain of the mouse stomatin (crystal form 2)
4c2rpbA_
99.7 48
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical membrane protein;
PDBTitle: the solution structure of membrane protein
5c2zv4O_
99.2 13
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
6c2qzvB_
96.6 15
PDB header:structural protein
Chain: B: PDB Molecule:major vault protein;
PDBTitle: draft crystal structure of the vault shell at 9 angstroms2 resolution
7c5ew5C_
75.3 13
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
8c2jp3A_
67.0 29
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
9c2jo1A_
66.7 33
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
10c3zey0_
66.6 13
PDB header:ribosome
Chain: 0: PDB Molecule:40s ribosomal protein s3a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
11c2mkvA_
62.3 19
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
12c5xyiB_
59.2 14
PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s3ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
13c3j3aB_
56.9 13
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: structure of the human 40s ribosomal proteins
14c2zxeG_
55.0 38
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
15c5naoA_
51.2 22
PDB header:signaling protein
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: nmr structure of tlr4 transmembrane domain (624-657) in dpc micelles
16c3u5gB_
44.5 22
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s1-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
17c5namA_
43.8 22
PDB header:signaling protein
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: nmr structure of tlr4 transmembrane domain (624-670) in dmpg/dhpc2 bicelles
18c2xzm4_
39.9 11
PDB header:ribosome
Chain: 4: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
19c2lp1A_
37.3 30
PDB header:membrane protein
Chain: A: PDB Molecule:c99;
PDBTitle: the solution nmr structure of the transmembrane c-terminal domain of2 the amyloid precursor protein (c99)
20c3n23E_
34.8 30
PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
21c2n28A_
not modelled 34.3 31
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
22c3kdpD_
not modelled 33.8 14
PDB header:hydrolase
Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1;
PDBTitle: crystal structure of the sodium-potassium pump
23c6mq2D_
not modelled 33.2 33
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
24c6mctC_
not modelled 33.2 33
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
25c6mctD_
not modelled 33.2 33
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
26c6mctE_
not modelled 33.2 33
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
27c6mctB_
not modelled 33.2 33
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
28c6mctF_
not modelled 33.2 33
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
29c6mctG_
not modelled 33.2 33
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
30c6mctJ_
not modelled 33.2 33
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
31c6mctL_
not modelled 33.2 33
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
32c6mctI_
not modelled 33.2 33
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
33c6mctO_
not modelled 33.2 33
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
34c6mctH_
not modelled 33.2 33
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
35c6mpwA_
not modelled 33.2 33
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
36c6mctK_
not modelled 33.2 33
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
37c6mctM_
not modelled 33.2 33
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
38c6mctN_
not modelled 33.2 33
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
39c6mctA_
not modelled 33.2 33
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
40c6ahqM_
not modelled 31.8 13
PDB header:motor protein
Chain: M: PDB Molecule:flagellar protein flil;
PDBTitle: structure of the 40-167 fragment of flil
41d2c1ia2
not modelled 31.8 19
Fold:Peptidoglycan deacetylase N-terminal noncatalytic region
Superfamily:Peptidoglycan deacetylase N-terminal noncatalytic region
Family:Peptidoglycan deacetylase N-terminal noncatalytic region
42c2lz3B_
not modelled 31.0 30
PDB header:membrane protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein wt
43c2lz3A_
not modelled 31.0 30
PDB header:membrane protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein wt
44c4pj0L_
not modelled 29.5 21
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
45c4pj0l_
not modelled 29.5 21
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
46c2lz4B_
not modelled 29.1 30
PDB header:membrane protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
47c2lz4A_
not modelled 29.1 30
PDB header:membrane protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
48c3wu2L_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
49c4ub8l_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
50c3a0hL_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
51c5e7cL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
52c4rvyL_
not modelled 28.8 21
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
53c5e7cl_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
54c4ixrL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
55c4ub8L_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
56c3a0bL_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
57c3a0hl_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
58c4rvyl_
not modelled 28.8 21
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
59c3prqL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
60d2axtl1
not modelled 28.8 21
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
61c3wu2l_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
62c4ub6L_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
63c3bz2L_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
64c4fbyd_
not modelled 28.8 21
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii
65c4tnjl_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
66c3arcL_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
67c2axtL_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
68c3kziL_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
69c2axtl_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
70c1s5lL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
71c4ub6l_
not modelled 28.8 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
72c4tnkL_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
73c4tnhl_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
74c4tniL_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
75c4tnhL_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
76c4fbyL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii
77c4tnkl_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
78c4tnil_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
79c4tnjL_
not modelled 28.8 21
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
80c1s5ll_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
81c4il6L_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
82c3bz1L_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
83c3a0bl_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
84c3prrL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
85c4ixql_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
86c4ixqL_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
87c4ixrl_
not modelled 28.8 21
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
88c4il6l_
not modelled 28.8 21
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
89c2lohA_
not modelled 27.1 30
PDB header:neuropeptide
Chain: A: PDB Molecule:p3(42);
PDBTitle: dimeric structure of transmembrane domain of amyloid precursor protein2 in micellar environment
90c6nhwE_
not modelled 26.7 15
PDB header:immune system
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
91c2lx0A_
not modelled 25.5 33
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
92c2m59A_
not modelled 25.3 11
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
93c2m59B_
not modelled 25.3 11
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
94c6nhwA_
not modelled 25.1 29
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
95c6nhwB_
not modelled 25.1 29
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
96c6nhwC_
not modelled 25.1 29
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
97c6hu9e_
not modelled 24.9 14
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
98c6g52H_
not modelled 23.3 14
PDB header:metal transport
Chain: H: PDB Molecule:metal transporter cnnm4;
PDBTitle: crystal structure of the cnmp binding domain of the magnesium2 transporter cnnm4
99c6iycE_
not modelled 22.9 30
PDB header:membrane protein
Chain: E: PDB Molecule:amyloid-beta a4 protein;
PDBTitle: recognition of the amyloid precursor protein by human gamma-secretase
100c3arcl_
not modelled 22.9 21
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
101c3j00Z_
not modelled 22.1 17
PDB header:ribosome/ribosomal protein
Chain: Z: PDB Molecule:cell division protein ftsq;
PDBTitle: structure of the ribosome-secye complex in the membrane environment
102c6nhwD_
not modelled 22.1 15
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
103c6nhwF_
not modelled 22.1 15
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
104c3kdpH_
not modelled 21.8 32
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
105c3kdpG_
not modelled 21.8 32
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
106c3jcul_
not modelled 21.8 21
PDB header:membrane protein
Chain: L: PDB Molecule:protein photosystem ii reaction center protein l;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
107d3ecfa1
not modelled 21.6 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ava4193-like
108d2f1la1
not modelled 21.4 17
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:RimM C-terminal domain-like
109c6nhyC_
not modelled 21.3 15
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
110c6nhyA_
not modelled 21.3 15
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
111c6nhyB_
not modelled 21.3 15
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
112c3j20A_
not modelled 21.1 7
PDB header:ribosome
Chain: A: PDB Molecule:30s ribosomal protein s3ae;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
113c6mpwE_
not modelled 20.9 33
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
114c6mq2A_
not modelled 20.9 33
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
115c6mpwD_
not modelled 20.9 33
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
116c6mq2C_
not modelled 20.9 33
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
117c6mpwC_
not modelled 20.9 33
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
118c6mq2B_
not modelled 20.9 33
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
119c6mpwB_
not modelled 20.9 33
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
120c6mq2E_
not modelled 20.9 33
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below