Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1489_(-)_1678558_1678914
DateFri Aug 2 13:30:07 BST 2019
Unique Job IDd90f9e03cb70346d
SequenceMSGLTSPKTY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:15.923 Y:20.917 Z:39.327
Model (left) based on template c6hwhX_
Top template information
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
Confidence and coverage
Confidence: 24.9% Coverage: 32%
38 residues ( 32% of your sequence) have been modelled with 24.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hwhX_



24.9 18
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
2c2l35B_



19.4 24
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
3c4wo1D_



18.5 24
PDB header:signaling protein
Chain: D: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
4c4wo1B_



18.5 24
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
5c4wo1C_



18.5 24
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
6c4wo1A_



18.5 24
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
7c4wolA_



18.3 24
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
8c2l34A_



18.3 24
PDB header:protein binding
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
9c2l34B_



18.3 24
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
10c4wolC_



17.7 24
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
11c4wolB_



17.7 24
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
12c2rg8A_



11.1 14
PDB header:apoptosis, translation
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: crystal structure of programmed for cell death 4 middle ma3 domain
13c2lopA_



10.8 21
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14a;
PDBTitle: backbone structure of human membrane protein tmem14a
14c2kztA_



9.2 12
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: structure of the tandem ma-3 region of pdcd4
15c6hltD_



8.5 31
PDB header:viral protein
Chain: D: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of rhinovirus-14 (hrv14)
16c2losA_



8.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14c;
PDBTitle: backbone structure of human membrane protein tmem14c
17c2l35A_



7.7 24
PDB header:protein binding
Chain: A: PDB Molecule:dap12-nkg2c_tm;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
18c2mgyA_



7.7 22
PDB header:membrane protein
Chain: A: PDB Molecule:translocator protein;
PDBTitle: solution structure of the mitochondrial translocator protein (tspo) in2 complex with its high-affinity ligand pk11195
19c2lz4A_



7.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
20c2lz4B_



7.3 17
PDB header:membrane protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
21c6hlwB_



not modelled 6.7 25
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
22d2di0a1



not modelled 6.5 15
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
23c2lz3B_



not modelled 6.0 17
PDB header:membrane protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein wt
24c2lz3A_



not modelled 6.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein wt
25c1w2wA_



not modelled 5.8 23
PDB header:isomerase
Chain: A: PDB Molecule:5-methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-phosphate2 isomerase related to regulatory eif2b subunits
26d1qkya_



not modelled 5.3 29
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below