Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1489A_(-)_1678948_1679178
DateFri Aug 2 13:30:07 BST 2019
Unique Job ID9e9eef460bc79eaf
SequenceVSVGEVEVLK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.382 Y:17.079 Z:50.296
Model (left) based on template d7reqa1
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
Confidence and coverage
Confidence: 90.2% Coverage: 57%
43 residues ( 57% of your sequence) have been modelled with 90.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d7reqa1
90.2 53
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
2c1e1cA_
87.9 50
PDB header:isomerase
Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain;
PDBTitle: methylmalonyl-coa mutase h244a mutant
3c3bicA_
61.6 39
PDB header:isomerase
Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor;
PDBTitle: crystal structure of human methylmalonyl-coa mutase
4c4r3uB_
57.7 29
PDB header:isomerase
Chain: B: PDB Molecule:2-hydroxyisobutyryl-coa mutase large subunit;
PDBTitle: crystal structure of 2-hydroxyisobutyryl-coa mutase
5c4xc8B_
39.9 24
PDB header:isomerase
Chain: B: PDB Molecule:isobutyryl-coa mutase fused;
PDBTitle: isobutyryl-coa mutase fused with bound butyryl-coa, gdp, and mg and2 without cobalamin (apo-icmf/gdp)
6c5ngyA_
19.4 41
PDB header:transferase
Chain: A: PDB Molecule:dsr-m glucansucrase inactive mutant e715q;
PDBTitle: crystal structure of leuconostoc citreum nrrl b-1299 dextransucrase2 dsr-m
7d1nsoa_
15.7 41
Fold:Acid proteases
Superfamily:Acid proteases
Family:Retroviral protease (retropepsin)
8d1ls9a_
13.4 30
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
9c3hz3A_
12.9 44
PDB header:transferase
Chain: A: PDB Molecule:glucansucrase;
PDBTitle: lactobacillus reuteri n-terminally truncated glucansucrase2 gtf180(d1025n)-sucrose complex
10c1yd7A_
12.2 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-keto acid:ferredoxin oxidoreductase subunit alpha;
PDBTitle: conserved hypothetical protein pfu-1647980-001 from pyrococcus2 furiosus
11c6hvgA_
12.0 48
PDB header:transferase
Chain: A: PDB Molecule:alternansucrase;
PDBTitle: crystal structure of truncated alternansucrase from leuconostoc2 mesenteroides nrrl b-1355
12c3ov5A_
11.7 36
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: atomic structure of the xanthomonas citri virb7 globular domain.
13c5lfcA_
11.0 41
PDB header:transferase
Chain: A: PDB Molecule:dsrv;
PDBTitle: crystal structure of leuconostoc citreum nrrl b-1299 n-terminally2 truncated dextransucrase dsr-m
14d2in5a1
10.5 45
Fold:YmcC-like
Superfamily:YmcC-like
Family:YmcC-like
15d1r3ea1
10.0 13
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
16c4aygB_
8.7 48
PDB header:transferase
Chain: B: PDB Molecule:glucansucrase;
PDBTitle: lactobacillus reuteri n-terminally truncated glucansucrase gtf180 in2 orthorhombic apo-form
17c5z81A_
8.6 23
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 15;
PDBTitle: trimeric structure of vibrio cholerae heat shock protein 15 at 2.32 angstrom resolution
18d2cx1a1
8.4 50
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
19d2ey4a1
8.2 50
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
20c3r90E_
8.0 63
PDB header:rna binding protein
Chain: E: PDB Molecule:malignant t cell-amplified sequence 1;
PDBTitle: crystal structure of malignant t cell-amplified sequence 1 protein
21c3ttoD_
not modelled 7.8 41
PDB header:transferase
Chain: D: PDB Molecule:dextransucrase;
PDBTitle: crystal structure of leuconostoc mesenteroides nrrl b-1299 n-2 terminally truncated dextransucrase dsr-e in triclinic form
22c5vaeH_
not modelled 7.4 44
PDB header:cell adhesion
Chain: H: PDB Molecule:accessory sec system protein asp3;
PDBTitle: crystal structure of accessory secretion protein 1 and 3
23c1q7hA_
not modelled 6.6 63
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum
24c1zs7A_
not modelled 6.5 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0525;
PDBTitle: the structure of gene product ape0525 from aeropyrum pernix
25c2mc5A_
not modelled 6.5 50
PDB header:protein binding
Chain: A: PDB Molecule:45l;
PDBTitle: a bacteriophage transcription regulator inhibits bacterial2 transcription initiation by -factor displacement
26c3aicC_
not modelled 6.5 48
PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
27c5jbfB_
not modelled 6.4 52
PDB header:transferase
Chain: B: PDB Molecule:inactive glucansucrase;
PDBTitle: 4,6-alpha-glucanotransferase gtfb (d1015n mutant) from lactobacillus2 reuteri 121 complexed with maltopentaose
28c2ve7A_
not modelled 5.9 33
PDB header:cell cycle
Chain: A: PDB Molecule:kinetochore protein hec1, kinetochore protein spc25;
PDBTitle: crystal structure of a bonsai version of the human ndc80 complex
29d2rspa_
not modelled 5.5 32
Fold:Acid proteases
Superfamily:Acid proteases
Family:Retroviral protease (retropepsin)
30d1iq8a3
not modelled 5.4 25
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
31c2rkhA_
not modelled 5.4 45
PDB header:transcription
Chain: A: PDB Molecule:putative apha-like transcription factor;
PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution
32c1debA_
not modelled 5.2 64
PDB header:structural protein
Chain: A: PDB Molecule:adenomatous polyposis coli protein;
PDBTitle: crystal structure of the n-terminal coiled coil domain from apc
33c5jfzB_
not modelled 5.1 69
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g

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