Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1494_(-)_1686277_1686579
DateFri Aug 2 13:30:07 BST 2019
Unique Job ID29d6f404eb9823ea
SequenceVPFLVALSGI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.624 Y:37.092 Z:52.258
Model (left) based on template c5xe3E_
Top template information
PDB header:hydrolase/antitoxin
Chain: E: PDB Molecule:probable antitoxin maze4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
Confidence and coverage
Confidence:100.0% Coverage: 81%
81 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xe3E_



100.0 100
PDB header:hydrolase/antitoxin
Chain: E: PDB Molecule:probable antitoxin maze4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
2c5xe3F_



100.0 100
PDB header:hydrolase/antitoxin
Chain: F: PDB Molecule:probable antitoxin maze4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
3c6f0kH_



87.6 50
PDB header:membrane protein
Chain: H: PDB Molecule:acth;
PDBTitle: alternative complex iii
4d1mnta_



77.8 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
5c6iyaD_



76.4 25
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
6c5cegC_



75.1 23
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
7c2rbfB_



58.1 34
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
8c3kxeD_



56.7 22
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
9c3qoqC_



44.3 20
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
10c6db1A_



37.8 18
PDB header:transferase
Chain: A: PDB Molecule:putative methyl-accepting chemotaxis protein;
PDBTitle: 2.0 angstrom resolution crystal structure of n-terminal ligand-binding2 domain of putative methyl-accepting chemotaxis protein from3 salmonella enterica
11d2ay0a1



35.0 34
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
12d2hzaa1



27.0 26
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
13c1u9pA_



21.6 12
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
14d2bj7a1



19.0 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
15c3izoG_



17.0 63
PDB header:viral protein
Chain: G: PDB Molecule:fiber;
PDBTitle: model of the fiber tail and its interactions with the penton base of2 human adenovirus by cryo-electron microscopy
16c1zllE_



16.4 47
PDB header:membrane protein/signaling protein
Chain: E: PDB Molecule:cardiac phospholamban;
PDBTitle: nmr structure of unphosphorylated human phospholamban2 pentamer
17c3fozB_



13.1 36
PDB header:transferase/rna
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
18c6nhwE_



12.6 88
PDB header:immune system
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
19c6nhwF_



12.6 88
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
20c6nhwD_



12.6 88
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
21c6nhwA_



not modelled 11.9 88
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
22c6nhwB_



not modelled 11.9 88
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
23c4xhpA_



not modelled 11.6 25
PDB header:structural protein
Chain: A: PDB Molecule:parm hybrid fusion protein;
PDBTitle: bacillus thuringiensis parm hybrid protein with adp, containing two2 parm mutants
24c6nhwC_



not modelled 10.7 88
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
25c1wlxA_



not modelled 10.0 31
PDB header:protein binding
Chain: A: PDB Molecule:alpha-actinin 4;
PDBTitle: solution structure of the third spectrin repeat of alpha-2 actinin-4
26c2p06A_



not modelled 9.9 67
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
27d2p06a1



not modelled 9.9 67
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:AF0060-like
28c2bj3D_



not modelled 9.8 21
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
29d2hzab1



not modelled 9.6 26
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
30d1lwma_



not modelled 9.5 12
Fold:HMG-box
Superfamily:HMG-box
Family:HMG-box
31c1q5vB_



not modelled 8.6 24
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
32c4mt0A_



not modelled 8.3 19
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:mtre protein;
PDBTitle: crystal structure of the open state of the neisseria gonorrhoeae mtre2 outer membrane channel
33c3s32A_



not modelled 8.2 27
PDB header:transcription
Chain: A: PDB Molecule:set1/ash2 histone methyltransferase complex subunit ash2;
PDBTitle: crystal structure of ash2l n-terminal domain
34c6a6xC_



not modelled 7.9 57
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
35c6fjwA_



not modelled 7.4 42
PDB header:hydrolase
Chain: A: PDB Molecule:cas6 protein;
PDBTitle: streptococcus thermophilus cas6
36c1yodA_



not modelled 7.4 60
PDB header:de novo protein
Chain: A: PDB Molecule:water-solublized phospholamban;
PDBTitle: crystal structure of a water soluble analog of phospholamban
37c4l0kC_



not modelled 7.3 58
PDB header:hydrolase
Chain: C: PDB Molecule:draiii;
PDBTitle: crystal structure of a type ii restriction endonuclease
38d1ryla_



not modelled 7.1 67
Fold:Hypothetical protein yfbM
Superfamily:Hypothetical protein yfbM
Family:Hypothetical protein yfbM
39c6humQ_



not modelled 6.8 30
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
40c2jrdA_



not modelled 6.7 47
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: influenza hemagglutinin fusion domain mutant f9a
41c5ij7B_



not modelled 6.7 32
PDB header:transferase/transferase inhibitor
Chain: B: PDB Molecule:enhancer of zeste homolog 2 (ezh2),histone-lysine n-
PDBTitle: structure of hs/acprc2 in complex with a pyridone inhibitor
42c2ca9B_



not modelled 6.7 29
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
43c4y3uB_



not modelled 6.5 60
PDB header:membrane protein
Chain: B: PDB Molecule:cardiac phospholamban;
PDBTitle: the structure of phospholamban bound to the calcium pump serca1a
44d1i11a_



not modelled 6.5 18
Fold:HMG-box
Superfamily:HMG-box
Family:HMG-box
45c2yulA_



not modelled 6.4 17
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sox-17;
PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17
46d1nz6a_



not modelled 5.9 18
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
47c2cosA_



not modelled 5.8 50
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine protein kinase lats2;
PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2)
48d2clyb1



not modelled 5.4 41
Fold:ATP synthase D chain-like
Superfamily:ATP synthase D chain-like
Family:ATP synthase D chain-like
49d2cosa1



not modelled 5.3 50
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
50c2clyE_



not modelled 5.2 41
PDB header:hydrolase
Chain: E: PDB Molecule:atp synthase d chain, mitochondrial;
PDBTitle: subcomplex of the stator of bovine mitochondrial atp synthase

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