Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1495_(-)_1686576_1686893
DateFri Aug 2 13:30:08 BST 2019
Unique Job ID9e8a4081fdc06bfd
SequenceVNAPLRGQVY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.007 Y:38.157 Z:27.928
Model (left) based on template c5xe3B_
Top template information
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
Confidence and coverage
Confidence:100.0% Coverage: 95%
100 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xe3B_



100.0 97
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
2d1ub4a_



100.0 22
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
3c5wygC_



100.0 26
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
4d1m1fa_



100.0 33
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
5d1ne8a_



100.0 24
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
6c4mzpC_



100.0 29
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
7c5hk3B_



99.9 31
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
8c5hjzA_



99.9 21
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
9c5ccaA_



99.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10d3vuba_



95.9 11
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
11c3jrzA_



95.9 11
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
12c5ikjA_



57.9 28
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
13c3llrA_



25.2 22
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha
14d1h3za_



21.6 12
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
15c2l89A_



19.4 16
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
16c4me8A_



18.3 9
PDB header:hydrolase
Chain: A: PDB Molecule:signal peptidase i;
PDBTitle: crystal structure of a signal peptidase i (ef3073) from enterococcus2 faecalis v583 at 2.27 a resolution
17c2z3tD_



18.0 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome p450;
PDBTitle: crystal structure of substrate free cytochrome p450 stap2 (cyp245a1)
18c4rmoA_



9.8 12
PDB header:toxin/rna
Chain: A: PDB Molecule:cptn toxin;
PDBTitle: crystal structure of the cptin type iii toxin-antitoxin system from2 eubacterium rectale
19c4z5qA_



9.2 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450 hydroxylase;
PDBTitle: crystal structure of the lnmz cytochrome p450 hydroxylase from the2 leinamycin biosynthetic pathway of streptomyces atroolivaceus s-1403 at 1.8 a resolution
20c2dkkA_



9.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450;
PDBTitle: structure/function studies of cytochrome p450 158a1 from streptomyces2 coelicolor a3(2)
21d1rz4a1



not modelled 7.9 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
22c1pjtB_



not modelled 7.9 31
PDB header:transferase/oxidoreductase/lyase
Chain: B: PDB Molecule:siroheme synthase;
PDBTitle: the structure of the ser128ala point-mutant variant of cysg, the2 multifunctional methyltransferase/dehydrogenase/ferrochelatase for3 siroheme synthesis
23d1okja2



not modelled 7.4 30
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
24c2of3A_



not modelled 6.6 8
PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:zyg-9;
PDBTitle: tog domain structure from c.elegans zyg9
25c3zeyM_



not modelled 6.6 22
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
26c4xe3B_



not modelled 6.6 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome p-450;
PDBTitle: olep, the cytochrome p450 epoxidase from streptomyces antibioticus2 involved in oleandomycin biosynthesis: functional analysis and3 crystallographic structure in complex with clotrimazole.
27d1s1fa_



not modelled 6.5 27
Fold:Cytochrome P450
Superfamily:Cytochrome P450
Family:Cytochrome P450
28c1bdsA_



not modelled 6.1 43
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
29d1bdsa_



not modelled 6.1 43
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
30c2zkqm_



not modelled 6.1 19
PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
31c5zc2B_



not modelled 6.0 8
PDB header:flavoprotein
Chain: B: PDB Molecule:p-hydroxyphenylacetate 3-hydroxylase, reductase component;
PDBTitle: acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah),2 reductase component (c1)
32c1qp6B_



not modelled 6.0 43
PDB header:de novo protein
Chain: B: PDB Molecule:protein (alpha2d);
PDBTitle: solution structure of alpha2d
33d2daqa1



not modelled 5.8 9
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
34c1cffB_



not modelled 5.4 43
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
35c3iz6M_



not modelled 5.4 15
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
36c2gfuA_



not modelled 5.3 17
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: nmr solution structure of the pwwp domain of mismatch2 repair protein hmsh6

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