Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1498A_(-)_1690140_1690352
DateFri Aug 2 13:30:08 BST 2019
Unique Job ID08e1b7f4dfe91349
SequenceMSNHTYRVIE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.013 Y:49.516 Z:24.770
Model (left) based on template c3oqtP_
Top template information
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage:100%
70 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3oqtP_



100.0 100
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
2c6r1eC_



100.0 66
PDB header:flavoprotein
Chain: C: PDB Molecule:dodecin;
PDBTitle: structure of dodecin from streptomyces coelicolor
3c2vxaL_



100.0 50
PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
4d2ux9a1



99.9 52
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
5c3onrI_



99.9 23
PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
6d2cc6a1



99.3 23
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
7c5lw8A_



65.9 13
PDB header:metal transport
Chain: A: PDB Molecule:protein tonb;
PDBTitle: nmr solution structure of helicobacter pylori tonb-ctd (residues 194-2 285)
8d1ulqa2



46.4 23
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
9c6fipA_



41.3 20
PDB header:transport protein
Chain: A: PDB Molecule:protein tonb;
PDBTitle: solution nmr structure of pseudomonas aeruginosa tonb ctd
10c2jxpA_



32.8 14
PDB header:lipoprotein
Chain: A: PDB Molecule:putative lipoprotein b;
PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a
11c5csaA_



32.8 27
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of domains bt-bccp-ac1-ac5 of yeast acetyl-coa2 carboxylase
12c4ubwB_



32.7 21
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase fada5;
PDBTitle: apo structure of the 3-ketoacyl-coa thiolase fada5 from m.2 tuberculosis
13d1m3ka2



30.8 27
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
14d1qd1a1



28.8 26
Fold:Ferredoxin-like
Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
15d1fc3a_



28.2 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
16d1lq1a_



26.9 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
17c4q35B_



26.1 15
PDB header:membrane protein
Chain: B: PDB Molecule:lps-assembly lipoprotein lpte;
PDBTitle: structure of a membrane protein
18c1ulqD_



25.9 25
PDB header:transferase
Chain: D: PDB Molecule:putative acetyl-coa acetyltransferase;
PDBTitle: crystal structure of tt0182 from thermus thermophilus hb8
19d1wdkc2



25.0 30
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
20c1wl5A_



24.1 25
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coenzyme a acetyltransferase 2;
PDBTitle: human cytosolic acetoacetyl-coa thiolase
21c2ibyD_



not modelled 23.3 18
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystallographic and kinetic studies of human mitochondrial2 acetoacetyl-coa thiolase (t2): the importance of potassium and3 chloride for its structure and function
22c3brtC_



not modelled 22.9 30
PDB header:transferase/transcription
Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase subunit beta,
PDBTitle: nemo/ikk association domain structure
23c2k9kA_



not modelled 22.8 16
PDB header:metal transport
Chain: A: PDB Molecule:tonb2;
PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum
24c4c2jA_



not modelled 21.2 32
PDB header:transferase
Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, mitochondrial;
PDBTitle: crystal structure of human mitochondrial 3-ketoacyl-coa2 thiolase in complex with coa
25c2m2kA_



not modelled 20.9 26
PDB header:transport protein
Chain: A: PDB Molecule:hasb protein;
PDBTitle: the structure of hasb ctd
26c4e1lC_



not modelled 20.8 21
PDB header:transferase
Chain: C: PDB Molecule:acetoacetyl-coa thiolase 2;
PDBTitle: crystal structure of acetoacetyl-coa thiolase (thla2) from clostridium2 difficile
27d1afwa2



not modelled 20.5 23
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
28c6bn2A_



not modelled 20.0 29
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of acetyl-coa acetyltransferase from elizabethkingia2 anophelis nuhp1
29c3o6uB_



not modelled 19.8 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein cpe2226;
PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195
30d2dy1a3



not modelled 19.5 28
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
31c2d9zA_



not modelled 19.2 21
PDB header:signaling protein
Chain: A: PDB Molecule:protein kinase c, nu type;
PDBTitle: solution structure of the ph domain of protein kinase c, nu2 type from human
32d1tola2



not modelled 18.0 11
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TolA
33c4egvC_



not modelled 17.5 14
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of a monomeric scp2-thiolase like protein type 12 (stlp1) from mycobacterium smegmatis
34c1tt9B_



not modelled 17.5 26
PDB header:transferase, lyase
Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase
PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer
35c5oarC_



not modelled 17.3 33
PDB header:hydrolase
Chain: C: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of native beta-n-acetylhexosaminidase isolated from2 aspergillus oryzae
36d1dwna_



not modelled 17.1 26
Fold:RNA bacteriophage capsid protein
Superfamily:RNA bacteriophage capsid protein
Family:RNA bacteriophage capsid protein
37c3ss6B_



not modelled 16.6 25
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of the bacillus anthracis acetyl-coa2 acetyltransferase
38c3svkB_



not modelled 16.5 26
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of acetyl-coa acetyltransferase from mycobacterium2 avium
39c2iikA_



not modelled 16.2 32
PDB header:transferase
Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal;
PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1)
40c4g7xB_



not modelled 15.7 13
PDB header:protein binding/protein binding
Chain: B: PDB Molecule:tola protein;
PDBTitle: crystal structure of a complex between the ctxphi piii n-terminal2 domain and the vibrio cholerae tola c-terminal domain
41c4nzsA_



not modelled 14.9 29
PDB header:transferase
Chain: A: PDB Molecule:beta-ketothiolase bktb;
PDBTitle: crystal structure of beta-ketothiolase bktb b from ralstonia eutropha2 h16
42c5ab6E_



not modelled 14.8 11
PDB header:transport protein
Chain: E: PDB Molecule:scp2-thiolase like protein;
PDBTitle: crystal structure of trypanosoma brucei scp2-thiolase like2 protein (tbslp) in complex with acetoacetyl-coa.
43c5vidI_



not modelled 14.6 30
PDB header:toxin
Chain: I: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
44c5vidG_



not modelled 14.6 30
PDB header:toxin
Chain: G: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
45d2bv3a3



not modelled 14.5 36
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
46c4h62Q_



not modelled 14.1 24
PDB header:transcription
Chain: Q: PDB Molecule:mediator of rna polymerase ii transcription subunit 17;
PDBTitle: structure of the saccharomyces cerevisiae mediator subcomplex2 med17c/med11c/med22c
47c1qd1A_



not modelled 13.7 26
PDB header:transferase
Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase;
PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase.
48d1kwia_



not modelled 13.4 12
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cathelicidin motif
49c4n45B_



not modelled 13.4 25
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of reduced form of thiolase from clostridium2 acetobutylicum
50c3goaA_



not modelled 13.3 25
PDB header:transferase
Chain: A: PDB Molecule:3-ketoacyl-coa thiolase;
PDBTitle: crystal structure of the salmonella typhimurium fada 3-ketoacyl-coa2 thiolase
51d1ihra_



not modelled 13.3 14
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TonB
52d1vkza1



not modelled 13.0 24
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
53c5ixmH_



not modelled 12.8 15
PDB header:transport protein
Chain: H: PDB Molecule:lps-assembly lipoprotein lpte;
PDBTitle: the lps transporter lptde from yersinia pestis, core complex
54c3hz4A_



not modelled 12.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from methanosarcina mazei
55c1afwB_



not modelled 12.0 25
PDB header:thiolase
Chain: B: PDB Molecule:3-ketoacetyl-coa thiolase;
PDBTitle: the 1.8 angstrom crystal structure of the dimeric2 peroxisomal thiolase of saccharomyces cerevisiae
56c2zkqe_



not modelled 11.9 17
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es6 part ii;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
57d1nfpa_



not modelled 11.9 38
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
58d2c5lc1



not modelled 11.6 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
59c6bjaA_



not modelled 11.4 11
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa acetyltransferase a;
PDBTitle: crystal structure of acat5 thiolase from ascaris suum in complex with2 coenzyme a
60c3hk4B_



not modelled 11.3 9
PDB header:lyase
Chain: B: PDB Molecule:mlr7391 protein;
PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution
61c4bl0B_



not modelled 11.3 24
PDB header:cell cycle
Chain: B: PDB Molecule:checkpoint serine/threonine-protein kinase bub1;
PDBTitle: crystal structure of yeast bub3-bub1 bound to phospho-spc105
62d1pkpa2



not modelled 11.3 20
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
63c6q2zB_



not modelled 11.2 17
PDB header:unknown function
Chain: B: PDB Molecule:upf0339 family protein;
PDBTitle: nmr solution structure of the hvo_2922 protein from haloferax volcanii
64c1gshA_



not modelled 11.0 26
PDB header:glutathione biosynthesis ligase
Chain: A: PDB Molecule:glutathione biosynthetic ligase;
PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5
65d2pjua1



not modelled 11.0 22
Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
66d2qale2



not modelled 11.0 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
67d2uube2



not modelled 11.0 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
68c6bjbB_



not modelled 10.9 17
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase a;
PDBTitle: crystal structure of acat2-c91s thiolase from ascaris suum in complex2 with propionyl-coa and nitrate
69c2c7yB_



not modelled 10.7 25
PDB header:transferase
Chain: B: PDB Molecule:3-ketoacyl-coa thiolase 2;
PDBTitle: plant enzyme
70c2ow8f_



not modelled 10.6 27
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa.
71c6aqpA_



not modelled 10.5 29
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: aspergillus fumigatus cytosolic thiolase: acetylated enzyme in complex2 with coa and potassium ions
72c4n6oB_



not modelled 10.5 23
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:cystatin-m;
PDBTitle: crystal structure of reduced legumain in complex with cystatin e/m
73c3brvC_



not modelled 10.4 35
PDB header:transferase/transcription
Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase subunit beta;
PDBTitle: nemo/ikkb association domain structure
74d3eeqa1



not modelled 10.2 11
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
75d1gsoa1



not modelled 10.1 20
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
76c1eg0B_



not modelled 10.1 19
PDB header:ribosome
PDB COMPND:
77c2wuaA_



not modelled 10.0 25
PDB header:transferase
Chain: A: PDB Molecule:acetoacetyl coa thiolase;
PDBTitle: structure of the peroxisomal 3-ketoacyl-coa thiolase from sunflower
78c4eycA_



not modelled 9.9 9
PDB header:unknown function
Chain: A: PDB Molecule:cathelicidin antimicrobial peptide;
PDBTitle: crystal structure of the cathelin-like domain of human cathelicidin2 ll-37 (hcld)
79c2x9aB_



not modelled 9.9 7
PDB header:viral protein
Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane
PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola
80d1e5ma2



not modelled 9.6 15
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
81c5xyiC_



not modelled 9.6 21
PDB header:ribosome
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: small subunit of trichomonas vaginalis ribosome
82c4wysB_



not modelled 9.6 25
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of thiolase from escherichia coli
83d1tqyb2



not modelled 9.4 26
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
84c3msoA_



not modelled 9.0 22
PDB header:isomerase
Chain: A: PDB Molecule:steroid delta-isomerase;
PDBTitle: crystal structure of a steroid delta-isomerase (np_250810.1) from2 pseudomonas aeruginosa at 2.57 a resolution
85d1p9ya_



not modelled 8.9 18
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
86c3gkuB_



not modelled 8.8 20
PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
87d1w26a2



not modelled 8.7 21
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
88c2vu2D_



not modelled 8.6 29
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: biosynthetic thiolase from z. ramigera. complex with s-pantetheine-11-2 pivalate.
89d1roaa_



not modelled 8.5 15
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
90c3by5A_



not modelled 8.4 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein;
PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
91d3by5a1



not modelled 8.4 19
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
92c3f40A_



not modelled 8.4 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_677363.1) from cytophaga hutchinsonii atcc 33406 at 1.27 a3 resolution
93c6et9D_



not modelled 8.3 18
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coa acetyltransferase thiolase;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
94c3bbnE_



not modelled 8.3 23
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
95c2kxhB_



not modelled 8.3 30
PDB header:protein binding
Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1;
PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide
96d2coaa1



not modelled 8.2 36
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
97d2w6ka1



not modelled 8.2 21
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
98c4o9cC_



not modelled 8.1 32
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of beta-ketothiolase (phaa) from ralstonia eutropha2 h16
99c2kzxA_



not modelled 8.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116

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