Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1507A_(-)_1697362_1697865
DateFri Aug 2 13:30:09 BST 2019
Unique Job ID81422cb17b404f40
SequenceMQSGQNILAK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.482 Y:33.005 Z:21.613
Model (left) based on template c3j8bA_
Top template information
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
Confidence and coverage
Confidence: 60.5% Coverage: 12%
20 residues ( 12% of your sequence) have been modelled with 60.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3j8bA_
60.5 35
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
2c3j7jA_
60.5 35
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
3c3j7kA_
60.5 35
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
4c3j8cA_
60.5 35
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
5c5a5tA_
58.4 35
PDB header:hydrolase
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: structure of mammalian eif3 in the context of the 43s preinitiation2 complex
6c4u1dA_
44.1 37
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit a;
PDBTitle: structure of the pci domain of translation initiation factor eif3a
7d2dw4a2
37.4 38
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
8c2n5lA_
34.8 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 c-terminal domain
9c3lovA_
27.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of putative protoporphyrinogen oxidase2 (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution
10c3zqpB_
25.6 33
PDB header:dna-binding protein
Chain: B: PDB Molecule:terminase small subunit;
PDBTitle: crystal structure of the small terminase oligomerization2 domain from a spp1-like bacteriophage
11c6fxsA_
24.2 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase, putative;
PDBTitle: structure of trypanosoma brucei type b ribose 5-phosphate isomerase
12d1p7ba1
20.5 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cytoplasmic domain of inward rectifier potassium channel
13d1xl4a1
20.3 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cytoplasmic domain of inward rectifier potassium channel
14c5fjnB_
16.3 37
PDB header:hydrolase
Chain: B: PDB Molecule:l-amino acid deaminase;
PDBTitle: structure of l-amino acid deaminase from proteus myxofaciens2 in complex with anthranilate
15c1u4fD_
16.3 43
PDB header:allergen
Chain: D: PDB Molecule:inward rectifier potassium channel 2;
PDBTitle: crystal structure of cytoplasmic domains of irk1 (kir2.1) channel
16c2v1dA_
15.2 41
PDB header:oxidoreductase/repressor
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
17c2xagA_
15.2 41
PDB header:transcription
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine
18c3k7pA_
13.8 17
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
19d1dxja_
12.3 38
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Family 19 glycosidase
20c4yk8B_
11.9 25
PDB header:protein transport
Chain: B: PDB Molecule:autophagy protein 13;
PDBTitle: crystal structure of the atg101-atg13 complex from fission yeast
21c3m1pA_
not modelled 11.8 17
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
22d1d5ta1
not modelled 11.8 9
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
23c1ps9A_
not modelled 10.9 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-dienoyl2 coa reductase
24c2bpa3_
not modelled 10.8 67
PDB header:virus/dna
Chain: 3: PDB Molecule:protein (subunit of bacteriophage phix174);
PDBTitle: atomic structure of single-stranded dna bacteriophage2 phix174 and its functional implications
25c2gixC_
not modelled 10.4 33
PDB header:metal transport
Chain: C: PDB Molecule:inward rectifier potassium channel 2;
PDBTitle: cytoplasmic domain structure of kir2.1 containing andersen's mutation2 r218q and rescue mutation t309k
26c2hkoA_
not modelled 10.0 41
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1
27d1n9pa_
not modelled 9.9 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cytoplasmic domain of inward rectifier potassium channel
28c3ka7A_
not modelled 9.7 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
29c2lm0A_
not modelled 9.4 48
PDB header:nuclear protein
Chain: A: PDB Molecule:af4/fmr2 family member 1/protein af-9 chimera;
PDBTitle: solution structure of the af4-af9 complex
30c6cgjA_
not modelled 9.3 44
PDB header:hydrolase
Chain: A: PDB Molecule:effector protein lem4 (lpg1101);
PDBTitle: structure of the had domain of effector protein lem4 (lpg1101) from2 legionella pneumophila
31c4rdmB_
not modelled 9.2 25
PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease r.ngovii;
PDBTitle: crystal structure of r.ngoavii restriction endonuclease b3 domain with2 cognate dna
32c6mquC_
not modelled 9.0 48
PDB header:de novo protein
Chain: C: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
33d2bcgg1
not modelled 8.8 18
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
34d1vg0a1
not modelled 7.8 18
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
35d1ps9a3
not modelled 7.7 26
Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
36c4o4aD_
not modelled 7.4 15
PDB header:lipid binding protein
Chain: D: PDB Molecule:lipoprotein, putative;
PDBTitle: 2.75 angstrom crystal structure of putative lipoprotein from bacillus2 anthracis.
37d2baaa_
not modelled 7.4 46
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Family 19 glycosidase
38c2z39A_
not modelled 7.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of brassica juncea chitinase catalytic2 module glu234ala mutant (bjchi3-e234a)
39c5nhuI_
not modelled 7.1 54
PDB header:hydrolase
Chain: I: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant
40c1ltxR_
not modelled 7.1 18
PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab geranylgeranyl2 transferase and isoprenoid
41c6dnoB_
not modelled 7.0 63
PDB header:signaling protein
Chain: B: PDB Molecule:protein phosphatase 1 regulatory subunit 3a;
PDBTitle: crystal structure of protein phosphatase 1 (pp1) bound to the muscle2 glycogen-targeting subunit (gm)
42d1wxsa1
not modelled 7.0 54
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:BM-002-like
43c5twvG_
not modelled 6.7 20
PDB header:transport protein
Chain: G: PDB Molecule:atp-sensitive inward rectifier potassium channel 11;
PDBTitle: cryo-em structure of the pancreatic atp-sensitive k+ channel2 sur1/kir6.2 in the presence of atp and glibenclamide
44d1j0ga_
not modelled 6.7 54
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:BM-002-like
45c2jg6A_
not modelled 6.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:dna-3-methyladenine glycosidase;
PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i from2 staphylococcus aureus
46d1etea_
not modelled 6.6 35
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
47c2k2bA_
not modelled 6.5 37
PDB header:transport protein
Chain: A: PDB Molecule:degenerin mec-4;
PDBTitle: sparse-constraint solution nmr structure of micelle-2 solublized cytosolic amino terminal domain of c. elegans3 mechanosensory ion channel subunit mec-4. new york4 consortium on membrane protein structure (nycomps) (casp5 target)
48c4ue9B_
not modelled 6.3 44
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e transporter;
PDBTitle: complex of d. melanogaster eif4e with the 4e-binding protein 4e-t
49c1gndA_
not modelled 6.2 9
PDB header:gtpase activation
Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor;
PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
50c5hs5A_
not modelled 6.2 41
PDB header:transcriptional regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarx;
PDBTitle: crystal structure of staphylococcus aureus sarx
51d1wlza1
not modelled 6.0 19
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
52c1wvvB_
not modelled 6.0 33
PDB header:hydrolase
Chain: B: PDB Molecule:chitinase c;
PDBTitle: crystal structure of chitinase c mutant e147q
53c1f8sA_
not modelled 5.8 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-amino acid oxidase;
PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
54c2dbtA_
not modelled 5.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: crystal structure of chitinase c from streptomyces griseus2 hut6037
55c1wlzD_
not modelled 5.7 19
PDB header:unknown function
Chain: D: PDB Molecule:cap-binding protein complex interacting protein
PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis
56c1z8yP_
not modelled 5.6 58
PDB header:virus
Chain: P: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
57c1z8yL_
not modelled 5.6 58
PDB header:virus
Chain: L: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
58c1z8yJ_
not modelled 5.6 58
PDB header:virus
Chain: J: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
59c1z8yN_
not modelled 5.6 58
PDB header:virus
Chain: N: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
60c2jrfA_
not modelled 5.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tubulin polymerization-promoting protein family
PDBTitle: solution nmr structure of tubulin polymerization-promoting2 protein family member 3 from homo sapiens. northeast3 structural genomics target hr387.
61c3i6dA_
not modelled 5.6 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of ppo from bacillus subtilis with af
62c2e3eA_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin, mutant def-bbb;
PDBTitle: nmr structure of def-bbb, a mutant of anopheles defensin2 def-aaa
63c6fxwA_
not modelled 5.5 17
PDB header:isomerase
Chain: A: PDB Molecule:putative ribose 5-phosphate isomerase;
PDBTitle: structure of leishmania infantum type b ribose 5-phosphate isomerase
64d1nkua_
not modelled 5.4 25
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase I (Tag)
65c2dkvA_
not modelled 5.3 31
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of class i chitinase from oryza sativa l.2 japonica
66d2diga1
not modelled 5.3 35
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
67c3qrzC_
not modelled 5.2 31
PDB header:hormone receptor
Chain: C: PDB Molecule:abscisic acid receptor pyl5;
PDBTitle: crystal structure of native abscisic acid receptor pyl5 at 2.62 angstrom
68c1djnB_
not modelled 5.2 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
69d2pa2a1
not modelled 5.2 30
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
70d2fnaa1
not modelled 5.1 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
71c2lrbA_
not modelled 5.1 21
PDB header:protein binding
Chain: A: PDB Molecule:actin-depolymerizing factor 1, isoforms a;
PDBTitle: solution structure of adf like unc-60a protein of caenorhabditis2 elegans
72d1r4xa1
not modelled 5.0 43
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:Coatomer appendage domain
73c3p1wA_
not modelled 5.0 18
PDB header:protein transport
Chain: A: PDB Molecule:rabgdi protein;
PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c

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