Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1508A_(-)_1699872_1700234
DateFri Aug 2 13:30:09 BST 2019
Unique Job ID0715edf99f984630
SequenceVKRALITGIT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.736 Y:43.383 Z:30.211
Model (left) based on template c3rfxB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:uronate dehydrogenase;
PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad
Confidence and coverage
Confidence: 42.8% Coverage: 48%
57 residues ( 48% of your sequence) have been modelled with 42.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfxB_



42.8 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:uronate dehydrogenase;
PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad
2d1i24a_



16.0 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
3c1z7eC_



14.5 17
PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna
4c1z45A_



14.5 9
PDB header:isomerase
Chain: A: PDB Molecule:gal10 bifunctional protein;
PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces cerevisiae3 complexed with nad, udp-glucose, and galactose
5c6ckgA_



14.4 43
PDB header:transferase
Chain: A: PDB Molecule:d-glycerate 3-kinase;
PDBTitle: d-glycerate 3-kinase from cryptococcus neoformans var. grubii serotype2 a (h99 / atcc 208821 / cbs 10515 / fgsc 9487)
6c3ay3C_



11.7 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of glucuronic acid dehydrogeanse from2 chromohalobacter salexigens
7c1n7gB_



11.1 74
PDB header:lyase
Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase;
PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose.
8d1odfa_



9.2 43
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
9c2z0lA_



8.7 56
PDB header:replication
Chain: A: PDB Molecule:early antigen protein d;
PDBTitle: crystal structure of ebv-dna polymerase accessory protein2 bmrf1
10c6j9nB_



8.4 56
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:acriic3;
PDBTitle: nmehnh+acriic3
11c6bwcA_



8.1 39
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysaccharide biosynthesis protein capd;
PDBTitle: x-ray structure of pen from bacillus thuringiensis
12c4lk3A_



8.0 56
PDB header:lyase
Chain: A: PDB Molecule:udp-glucuronic acid decarboxylase 1;
PDBTitle: crystal structure of human udp-xylose synthase r236a substitution
13d1rpna_



8.0 72
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
14c2q1wC_



7.8 47
PDB header:sugar binding protein
Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
15c3ha2B_



7.6 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-quinone reductase;
PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a
16d2cuqa1



7.3 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
17c5if3B_



7.3 44
PDB header:oxidoreductase
Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr;
PDBTitle: crystal structure of a short-chain dehydrogenase/reductase sdr from2 burkholderia vietnamiensis
18d1n7ha_



7.2 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
19c2qx7A_



6.6 39
PDB header:plant protein
Chain: A: PDB Molecule:eugenol synthase 1;
PDBTitle: structure of eugenol synthase from ocimum basilicum
20c1jmtB_



6.6 67
PDB header:rna binding protein
Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer
21c2hpvA_



not modelled 6.5 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
22c2z1mC_



not modelled 6.4 83
PDB header:lyase
Chain: C: PDB Molecule:gdp-d-mannose dehydratase;
PDBTitle: crystal structure of gdp-d-mannose dehydratase from aquifex aeolicus2 vf5
23c3slgB_



not modelled 6.3 44
PDB header:transferase
Chain: B: PDB Molecule:pbgp3 protein;
PDBTitle: crystal structure of pbgp3 protein from burkholderia pseudomallei
24c4r1sB_



not modelled 6.2 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:cinnamoyl coa reductase;
PDBTitle: crystal structure of petunia hydrida cinnamoyl-coa reductase
25d1qpma_



not modelled 6.1 62
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
26c4rgiA_



not modelled 6.1 60
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ktsc domain protein ypo2434 from yersinia pestis
27c2iodD_



not modelled 6.0 33
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydroflavonol 4-reductase;
PDBTitle: binding of two substrate analogue molecules to2 dihydroflavonol-4-reductase alters the functional geometry3 of the catalytic site
28d1db3a_



not modelled 6.0 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
29d1gy8a_



not modelled 5.9 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
30d1rkxa_



not modelled 5.9 44
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
31c2zklA_



not modelled 5.6 18
PDB header:isomerase
Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f;
PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus
32d1gega_



not modelled 5.4 39
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
33c4fquF_



not modelled 5.4 33
PDB header:oxidoreductase
Chain: F: PDB Molecule:putative glutathione transferase;
PDBTitle: glutathionyl-hydroquinone reductase pcpf of sphingobium2 chlorophenolicum
34d1t2aa_



not modelled 5.3 74
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
35c1t2aC_



not modelled 5.3 74
PDB header:structural genomics,lyase
Chain: C: PDB Molecule:gdp-mannose 4,6 dehydratase;
PDBTitle: crystal structure of human gdp-d-mannose 4,6-dehydratase
36d1tnsa_



not modelled 5.3 46
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
37c4lvuB_



not modelled 5.2 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, short chain dehydrogenase/reductase family;
PDBTitle: crystal structure of a putative short chain dehydrogenase from2 burkholderia thailandensis
38d1sr8a_



not modelled 5.2 38
Fold:CbiD-like
Superfamily:CbiD-like
Family:CbiD-like
39c3ak4C_



not modelled 5.2 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-dependent quinuclidinone reductase;
PDBTitle: crystal structure of nadh-dependent quinuclidinone reductase from2 agrobacterium tumefaciens
40c3gquA_



not modelled 5.2 36
PDB header:rna binding protein
Chain: A: PDB Molecule:nop5p protein;
PDBTitle: pyrococcus horikoshii nop5 rna binding domain
41c6nrpC_



not modelled 5.2 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:3-oxoacyl-acp reductase fabg;
PDBTitle: putative short-chain dehydrogenase/reductase (sdr) from acinetobacter2 baumannii
42c1yvwD_



not modelled 5.1 27
PDB header:hydrolase
Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.
43d1yvwa1



not modelled 5.1 27
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)

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