Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1508c_(-)_1698101_1699900
DateFri Aug 2 13:30:09 BST 2019
Unique Job ID8d9bc5b9b49ca8f9
SequenceVIPVMSARFT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.435 Y:23.383 Z:22.717
Model (left) based on template c5t42A_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
Confidence and coverage
Confidence: 86.3% Coverage: 4%
21 residues ( 4% of your sequence) have been modelled with 86.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5t42A_
86.3 67
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
2c1s1hN_
46.2 40
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29-b;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
3c5a63D_
28.6 35
PDB header:hydrolase
Chain: D: PDB Molecule:gamma-secretase subunit pen-2;
PDBTitle: cryo-em structure of the human gamma-secretase complex at 3.4 angstrom2 resolution.
4c4e8uA_
26.7 42
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein t8p19.180;
PDBTitle: crystal structure of arabidopsis idn2 xs domain along with a small2 segment of adjacent coiled-coil region
5c2vecA_
24.6 24
PDB header:cytosolic protein
Chain: A: PDB Molecule:pirin-like protein yhak;
PDBTitle: the crystal structure of the protein yhak from escherichia2 coli
6c6m8sM_
24.0 47
PDB header:signaling protein
Chain: M: PDB Molecule:btb/poz domain-containing protein kctd12;
PDBTitle: crystal structure of the kctd12 h1 domain in complex with gbeta1gamma22 subunits
7d1laja_
23.3 38
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Bromoviridae-like VP
8c1lajA_
23.3 38
PDB header:virus/rna
Chain: A: PDB Molecule:capsid protein;
PDBTitle: the structure of tomato aspermy virus by x-ray2 crystallography
9c3cjsA_
23.2 39
PDB header:transferase/ribosomal protein
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: minimal recognition complex between prma and ribosomal protein l11
10d1lgha_
23.1 44
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
11c3zey8_
21.6 36
PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
12c5xyid_
21.4 43
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s3, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
13c3j20P_
20.4 43
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
14c2xznN_
20.0 36
PDB header:ribosome
Chain: N: PDB Molecule:rps29e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
15c2zkqn_
19.4 50
PDB header:ribosomal protein/rna
Chain: N: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
16c6az1S_
19.1 36
PDB header:ribosome/antibiotic
Chain: S: PDB Molecule:ribosomal protein s14;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
17c3jyvN_
19.0 43
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
18c5xxud_
17.9 36
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein us3;
PDBTitle: small subunit of toxoplasma gondii ribosome
19c5x8rx_
17.9 43
PDB header:ribosome
Chain: X: PDB Molecule:
PDBTitle: structure of the 30s small subunit of chloroplast ribosome from2 spinach
20c5mmjx_
16.2 43
PDB header:ribosome
Chain: X: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
21c1f15C_
not modelled 15.2 38
PDB header:virus
Chain: C: PDB Molecule:coat protein;
PDBTitle: cucumber mosaic virus (strain fny)
22d1f15b_
not modelled 12.2 38
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Bromoviridae-like VP
23c5lf8A_
not modelled 12.1 42
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 17;
PDBTitle: human nucleoside diphosphate-linked moiety x motif 17 (nudt17)
24d2gmfa_
not modelled 11.2 78
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
25c1scfA_
not modelled 10.2 50
PDB header:hormone/growth factor
Chain: A: PDB Molecule:stem cell factor;
PDBTitle: human recombinant stem cell factor
26d1scfa_
not modelled 10.2 50
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
27d3nlaa_
not modelled 10.1 33
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
28d1f15a_
not modelled 9.2 38
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Bromoviridae-like VP
29d1x61a2
not modelled 8.9 38
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
30c6a68A_
not modelled 8.6 47
PDB header:exocytosis
Chain: A: PDB Molecule:calcium-dependent secretion activator 1;
PDBTitle: the crystal structure of rat calcium-dependent activator protein for2 secretion (caps) damh domain
31c2lzsE_
not modelled 8.6 24
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
32c2momC_
not modelled 8.5 61
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
33c2momB_
not modelled 8.5 61
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
34c1ceeB_
not modelled 8.5 17
PDB header:structural protein regulation
Chain: B: PDB Molecule:wiskott-aldrich syndrome protein wasp;
PDBTitle: solution structure of cdc42 in complex with the gtpase2 binding domain of wasp
35c4pnbC_
not modelled 8.5 67
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
36c2k3mA_
not modelled 8.2 60
PDB header:membrane protein
Chain: A: PDB Molecule:rv1761c;
PDBTitle: rv1761c
37c3io5B_
not modelled 8.2 33
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
38c4pnbA_
not modelled 8.2 67
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
39c4pnbD_
not modelled 8.2 67
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
40c4pnbB_
not modelled 7.8 67
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
41d1scfc_
not modelled 7.7 50
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
42c3lr4A_
not modelled 7.6 29
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: periplasmic domain of the riss sensor protein from burkholderia2 pseudomallei, barium phased at low ph
43c4mnoA_
not modelled 7.4 58
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 1a;
PDBTitle: crystal structure of aif1a from pyrococcus abyssi
44c3ut7A_
not modelled 7.3 26
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural view of a non pfam singleton and crystal packing analysis
45d2k4xa1
not modelled 7.2 67
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
46c2mi2A_
not modelled 7.2 22
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
47c2a2bA_
not modelled 6.9 43
PDB header:antibiotic
Chain: A: PDB Molecule:bacteriocin curvacin a;
PDBTitle: curvacin a
48c6qb7A_
not modelled 6.7 42
PDB header:signaling protein
Chain: A: PDB Molecule:btb/poz domain-containing protein kctd16;
PDBTitle: structure of the h1 domain of human kctd16
49d1g72b_
not modelled 6.7 80
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
50d1iarb1
not modelled 6.6 80
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
51c4apmA_
not modelled 6.6 41
PDB header:membrane protein
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: crystal structure of ama1 from babesia divergens
52d2ad6b1
not modelled 6.5 80
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
53d1w6sb_
not modelled 6.4 60
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
54c2lioA_
not modelled 6.3 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of bfr322 from bacteroides fragilis, northeast2 structural genomics consortium target bfr322
55d1ucsa_
not modelled 6.3 60
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
56d1wj9a2
not modelled 6.2 38
Fold:Ferredoxin-like
Superfamily:CRISPR-associated protein
Family:CRISPR-associated protein
57c2lq1A_
not modelled 6.2 53
PDB header:antifreeze protein
Chain: A: PDB Molecule:de novo designed antifreeze peptide 3;
PDBTitle: solution structure of de novo designed antifreeze peptide 3
58c5wsuD_
not modelled 6.1 67
PDB header:motor protein/calcium binding protein
Chain: D: PDB Molecule:unconventional myosin-viia;
PDBTitle: crystal structure of myosin viia iq5-sah in complex with apo-cam
59c6g72A_
not modelled 6.0 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: mouse mitochondrial complex i in the deactive state
60c5gpdB_
not modelled 6.0 44
PDB header:dna binding protein
Chain: B: PDB Molecule:sterol regulatory element-binding protein 1;
PDBTitle: crystal structure of the binding domain of srebp from fission yeast
61c1qhhD_
not modelled 6.0 20
PDB header:hydrolase
Chain: D: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
62d1l6ja1
not modelled 6.0 16
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
63d1lrwb_
not modelled 5.9 80
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
64c5nhqA_
not modelled 5.9 32
PDB header:viral protein
Chain: A: PDB Molecule:agnoprotein;
PDBTitle: nuclear magnetic resonance structure of the human polyoma jc virus2 agnoprotein
65c2l16A_
not modelled 5.7 26
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
66c3bmzA_
not modelled 5.6 38
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: violacein biosynthetic enzyme vioe
67c4wyhA_
not modelled 5.6 31
PDB header:replication
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of prix from the hyperthermophilic archaeon2 sulfolobus solfataricus
68c6f21B_
not modelled 5.5 67
PDB header:toxin
Chain: B: PDB Molecule:dendroaspis polylepis mt9;
PDBTitle: crystal structure of toxin mt9 from mamba venom
69c1ce4A_
not modelled 5.5 67
PDB header:viral protein
Chain: A: PDB Molecule:protein (v3 loop of hiv-1 envelope protein);
PDBTitle: conformational model for the consensus v3 loop of the envelope protein2 gp120 of hiv-1
70c2odbB_
not modelled 5.4 31
PDB header:protein binding
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6;
PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)
71c2pv9C_
not modelled 5.3 83
PDB header:hydrolase
Chain: C: PDB Molecule:proteinase-activated receptor 4;
PDBTitle: crystal structure of murine thrombin in complex with the extracellular2 fragment of murine par4
72c4b0fE_
not modelled 5.2 71
PDB header:immune system
Chain: E: PDB Molecule:c4b-binding protein alpha chain;
PDBTitle: heptameric core complex structure of c4b-binding (c4bp) protein from2 human
73c3hp7A_
not modelled 5.2 100
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hemolysin, putative;
PDBTitle: putative hemolysin from streptococcus thermophilus.
74d1tq5a1
not modelled 5.1 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Pirin-like

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