Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1510_(-)_1701301_1702599
DateFri Aug 2 13:30:09 BST 2019
Unique Job ID8ffd688fc34ac3ff
SequenceMYERRHERGM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.375 Y:65.182 Z:66.821
Model (left) based on template c6cc4A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
Confidence and coverage
Confidence:100.0% Coverage: 99%
427 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6cc4A_



100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
2c6idrA_



100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:mate family efflux transporter;
PDBTitle: crystal structure of vibrio cholerae mate transporter vcmn in the bent2 form
3c5y50A_



100.0 9
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
4c5xjjA_



100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:multi drug efflux transporter;
PDBTitle: crystal structure of a mate family protein
5c5t77A_



100.0 8
PDB header:transport protein
Chain: A: PDB Molecule:putative lipid ii flippase murj;
PDBTitle: crystal structure of the mop flippase murj
6c4lz9A_



100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:bh2163 protein;
PDBTitle: structure of mate multidrug transporter dinf-bh in complex with r6g
7c6fv6A_



100.0 10
PDB header:membrane protein
Chain: A: PDB Molecule:aq128;
PDBTitle: monomer structure of the mate family multidrug resistance transporter2 aq_128 from aquifex aeolicus in the outward-facing state
8c4z3pA_



100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:putative drug/sodium antiporter;
PDBTitle: mate transporter clbm in complex with rb+
9c3vvpA_



100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
10c3mkuB_



99.9 10
PDB header:transport protein
Chain: B: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
11c3mkuA_



99.9 10
PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
12c4hunA_



99.4 10
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux protein;
PDBTitle: mate transporter norm-ng in complex with r6g and monobody
13c4n7wA_



63.3 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
14c3wdoA_



39.4 11
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
15c3epsB_



15.7 25
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase;
PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli
16c3ukzC_



15.4 44
PDB header:protein transport/protein binding
Chain: C: PDB Molecule:nuclear cap-binding protein subunit 1;
PDBTitle: mouse importin alpha: mouse cbp80 cnls complex
17c3dxeB_



14.3 50
PDB header:protein binding
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: crystal structure of the intracellular domain of human app (t668a2 mutant) in complex with fe65-ptb2
18c1l4aE_



12.6 50
PDB header:endocytosis/exocytosis
Chain: E: PDB Molecule:synaphin a;
PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
19c3efdK_



12.0 33
PDB header:immune system
Chain: K: PDB Molecule:kcsa;
PDBTitle: the crystal structure of the cytoplasmic domain of kcsa
20c5mg3D_



11.7 10
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
21d2crba1



not modelled 9.9 38
Fold:Spectrin repeat-like
Superfamily:MIT domain-like
Family:MIT domain
22c2n90A_



not modelled 9.8 16
PDB header:transferase
Chain: A: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
23c2n90B_



not modelled 9.8 16
PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
24c6g9xB_



not modelled 9.5 11
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
25d1rfya_



not modelled 8.8 31
Fold:Long alpha-hairpin
Superfamily:Transcriptional repressor TraM
Family:Transcriptional repressor TraM
26d1sb0a_



not modelled 8.5 22
Fold:Kix domain of CBP (creb binding protein)
Superfamily:Kix domain of CBP (creb binding protein)
Family:Kix domain of CBP (creb binding protein)
27c3cguB_



not modelled 8.4 20
PDB header:hormone/signaling protein
Chain: B: PDB Molecule:protein giant-lens;
PDBTitle: crystal structure of unliganded argos
28d1upgb_



not modelled 8.1 31
Fold:Long alpha-hairpin
Superfamily:Transcriptional repressor TraM
Family:Transcriptional repressor TraM
29c2ko2A_



not modelled 8.1 18
PDB header:membrane protein
Chain: A: PDB Molecule:reticulon-4;
PDBTitle: nogo66
30c4wriA_



not modelled 7.8 83
PDB header:toxin/toxin inhibitor
Chain: A: PDB Molecule:okadaic acid binding protein 2-alpha;
PDBTitle: crystal structure of okadaic acid binding protein 2.1
31c6j9lE_



not modelled 7.5 60
PDB header:hydrolase inhibitor/hydrolase
Chain: E: PDB Molecule:hnh endonuclease family protein;
PDBTitle: fnobh+acriic2
32c2hjdA_



not modelled 7.3 23
PDB header:signaling protein
Chain: A: PDB Molecule:quorum-sensing antiactivator;
PDBTitle: crystal structure of a second quorum sensing antiactivator tram2 from2 a. tumefaciens strain a6
33c5ogeE_



not modelled 7.1 7
PDB header:membrane protein
Chain: E: PDB Molecule:gdp-mannose transporter 1;
PDBTitle: crystal structure of a nucleotide sugar transporter
34c2bx9J_



not modelled 6.9 31
PDB header:transcription regulation
Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory
PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions
35c5wljD_



not modelled 6.8 40
PDB header:de novo protein
Chain: D: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
36c5wljA_



not modelled 6.8 40
PDB header:de novo protein
Chain: A: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
37c5wljC_



not modelled 6.8 40
PDB header:de novo protein
Chain: C: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
38c5wljB_



not modelled 6.8 40
PDB header:de novo protein
Chain: B: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
39c6oitG_



not modelled 6.7 10
PDB header:plant protein
Chain: G: PDB Molecule:protein chromatin remodeling 35;
PDBTitle: cryoem structure of arabidopsis ddr' complex (drd1 peptide-dms3-rdm1)
40c2jv5A_



not modelled 6.7 19
PDB header:protein binding
Chain: A: PDB Molecule:reticulon-4;
PDBTitle: nogo54
41d2p7tc1



not modelled 6.5 9
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
42c5tpjA_



not modelled 6.4 19
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
43c2z3xC_



not modelled 6.3 14
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:small, acid-soluble spore protein c;
PDBTitle: structure of a protein-dna complex essential for dna protection in2 spore of bacillus species
44c2ks1B_



not modelled 6.3 14
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
45c2vckC_



not modelled 6.3 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:cyanobacterial phycoerythrobilin;
PDBTitle: structure of phycoerythrobilin synthase pebs from the cyanophage p-2 ssm2 in complex with the bound substrate biliverdin ixa
46c2f9jP_



not modelled 6.3 29
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
47c5ldwo_



not modelled 6.2 38
PDB header:oxidoreductase
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
48c4wybP_



not modelled 6.2 23
PDB header:contractile protein/protein binding
Chain: P: PDB Molecule:bud site selection protein 6;
PDBTitle: structure of the bud6 flank domain in complex with actin
49c2yvxD_



not modelled 6.0 11
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
50c5z62N_



not modelled 5.9 30
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
51d1pw4a_



not modelled 5.9 10
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
52c4gkgA_



not modelled 5.9 28
PDB header:signaling protein
Chain: A: PDB Molecule:c4-dicarboxylate transport sensor protein dctb;
PDBTitle: crystal structure of the s-helix linker
53c2bbjB_



not modelled 5.9 9
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
54d2i76a1



not modelled 5.8 24
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
55c6et8B_



not modelled 5.7 18
PDB header:protein binding
Chain: B: PDB Molecule:albicidin resistance protein;
PDBTitle: crystal structure of alba in complex with albicidin
56c2l37A_



not modelled 5.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:ribosome-inactivating protein luffin p1;
PDBTitle: 3d solution structure of arginine/glutamate-rich polypeptide luffin p12 from the seeds of sponge gourd (luffa cylindrical)
57d1azta1



not modelled 5.6 43
Fold:Transducin (alpha subunit), insertion domain
Superfamily:Transducin (alpha subunit), insertion domain
Family:Transducin (alpha subunit), insertion domain
58d2j0111



not modelled 5.5 17
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
59c5bs7F_



not modelled 5.5 20
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
60c2momB_



not modelled 5.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
61c2momC_



not modelled 5.4 12
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
62d3ehbb2



not modelled 5.4 6
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
63c4wybJ_



not modelled 5.4 23
PDB header:contractile protein/protein binding
Chain: J: PDB Molecule:bud site selection protein 6;
PDBTitle: structure of the bud6 flank domain in complex with actin
64c6o3sA_



not modelled 5.4 24
PDB header:plant protein, hydrolase
Chain: A: PDB Molecule:ribosome-inactivating protein luffin p1;
PDBTitle: nmr solution structure of vicilin-buried peptide-8 (vbp-8)
65d1jo5a_



not modelled 5.2 16
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
66c2d7dB_



not modelled 5.2 44
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
67c3hlsE_



not modelled 5.2 25
PDB header:signaling protein
Chain: E: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: crystal structure of the signaling helix coiled-coil doimain2 of the beta-1 subunit of the soluble guanylyl cyclase
68c3j47O_



not modelled 5.1 50
PDB header:protein binding
Chain: O: PDB Molecule:26s proteasome regulatory subunit rpn9;
PDBTitle: formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
69c5vnyA_



not modelled 5.1 10
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:lethal (2) giant discs 1, isoform b;
PDBTitle: crystal structure of dm14-3 domain of lgd

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Transmembrane helix prediction 

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