Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1519_(-)_1710739_1711008
DateFri Aug 2 13:30:10 BST 2019
Unique Job ID9a4d61919902e23f
SequenceLRCGCLACDG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.784 Y:40.611 Z:26.912
Model (left) based on template c3bcxA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase;
PDBTitle: e1 dehydrase
Confidence and coverage
Confidence: 92.2% Coverage: 44%
39 residues ( 44% of your sequence) have been modelled with 92.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bcxA_
92.2 21
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase;
PDBTitle: e1 dehydrase
2c4k2bA_
90.8 22
PDB header:transferase
Chain: A: PDB Molecule:ntd biosynthesis operon protein ntda;
PDBTitle: crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
3d2fnua1
90.2 20
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
4c5w70B_
87.7 28
PDB header:transferase
Chain: B: PDB Molecule:l-glutamine:2-deoxy-scyllo-inosose aminotransferase;
PDBTitle: x-ray structure of rbmb from streptomyces ribosidificus
5c2po3B_
87.5 30
PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
6c5k8bA_
86.7 17
PDB header:transferase
Chain: A: PDB Molecule:8-amino-3,8-dideoxy-alpha-d-manno-octulosonate
PDBTitle: x-ray structure of kdna, 8-amino-3,8-dideoxy-alpha-d-manno-2 octulosonate transaminase, from shewanella oneidensis in the presence3 of the external aldimine with plp and glutamate
7c3ju7B_
86.1 39
PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
8c3frkB_
81.1 19
PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
9c3uwcA_
77.6 16
PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
10d1o69a_
71.5 16
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
11c5u20C_
69.3 26
PDB header:transferase
Chain: C: PDB Molecule:putative aminotransferase;
PDBTitle: x-ray structure of the wlarg aminotransferase from campylobacter2 jejuni, internal plp-aldimine
12c4ytjC_
68.3 23
PDB header:transferase
Chain: C: PDB Molecule:cals13;
PDBTitle: crystal structure of sugar aminotransferase cals13 from micromonospora2 echinospora
13c6ewqA_
67.9 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative capsular polysaccharide biosynthesis protein;
PDBTitle: putative sugar aminotransferase spr1654 from streptococcus pneumoniae,2 plp-form
14c3dr4B_
60.7 30
PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
15c2c7tA_
59.7 14
PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose aminotransferase;
PDBTitle: crystal structure of the plp-bound form of btrr, a dual functional2 aminotransferase involved in butirosin biosynthesis.
16c4qgrA_
57.5 31
PDB header:transferase
Chain: A: PDB Molecule:degt/dnrj/eryc1/strs aminotransferase;
PDBTitle: crystal structure of a degt dnrj eryc1 strs aminotransferase from2 brucella abortus
17d1b9ha_
54.7 21
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
18c3nysA_
48.9 28
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
19c2r0tA_
46.8 6
PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal structure of gdp-4-keto-6-deoxymannose-3-dehydratase with a2 trapped plp-glutamate geminal diamine
20d1mdoa_
46.2 27
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
21c5uidC_
not modelled 45.8 29
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase tlmj;
PDBTitle: the crystal structure of an aminotransferase tlmj from2 streptoalloteichus hindustanus
22c2ogeC_
not modelled 44.4 26
PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
23c4xauG_
not modelled 41.5 32
PDB header:transferase
Chain: G: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of ats13 from actinomadura melliaura
24c4lc3B_
not modelled 37.3 27
PDB header:transferase
Chain: B: PDB Molecule:putative udp-4-amino-4-deoxy-l-arabinose--oxoglutarate
PDBTitle: x-ray crystal structure of a putative udp-4-amino-4-deoxy-l-arabinose-2 -oxoglutarate aminotransferase from burkholderia cenocepacia
25c5dotA_
not modelled 13.4 67
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
26c5douC_
not modelled 13.3 67
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
27c2qlcC_
not modelled 13.0 26
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls
28d1a9xb2
not modelled 11.9 50
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
29c3lx4B_
not modelled 11.4 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:fe-hydrogenase;
PDBTitle: stepwise [fefe]-hydrogenase h-cluster assembly revealed in the2 structure of hyda(deltaefg)
30d1e5ba_
not modelled 10.9 28
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family II
31d2csfa1
not modelled 9.7 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:CUT domain
32c1keeH_
not modelled 9.7 50
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
33c5lutG_
not modelled 9.1 44
PDB header:transferase
Chain: G: PDB Molecule:blm helicase;
PDBTitle: structures of dhbn domain of gallus gallus blm helicase
34c1h8bB_
not modelled 9.0 43
PDB header:structural protein
Chain: B: PDB Molecule:titin;
PDBTitle: ef-hands 3,4 from alpha-actinin / z-repeat 7 from titin
35c2mf3A_
not modelled 8.0 60
PDB header:toxin
Chain: A: PDB Molecule:u2-segestritoxin-sf1a;
PDBTitle: sgtx-sf1a
36d3c8ya1
not modelled 7.1 50
Fold:Fe-only hydrogenase
Superfamily:Fe-only hydrogenase
Family:Fe-only hydrogenase
37c4iaoD_
not modelled 7.0 47
PDB header:hydrolase/transcription
Chain: D: PDB Molecule:regulatory protein sir4;
PDBTitle: crystal structure of sir2 c543s mutant in complex with sid domain of2 sir4
38d1hehc_
not modelled 6.9 22
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family II
39c3femB_
not modelled 6.8 39
PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae
40c1jy2O_
not modelled 6.7 77
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of the central region of bovine fibrinogen (e52 fragment) at 1.4 angstroms resolution
41c2zbtB_
not modelled 6.0 26
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from thermus2 thermophilus hb8
42c3c6cA_
not modelled 5.7 67
PDB header:hydrolase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution
43c2a45H_
not modelled 5.4 77
PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin
44c3bbpD_
not modelled 5.3 58
PDB header:protein transport/splicing
Chain: D: PDB Molecule:grip and coiled-coil domain-containing protein 2;
PDBTitle: rab6-gtp:gcc185 rab binding domain complex

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