Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1528c_(papA4)_1728959_1729456
DateFri Aug 2 13:30:11 BST 2019
Unique Job ID8281f30fa56ee08d
SequenceVTQLPQPTWR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.569 Y:41.619 Z:36.176
Model (left) based on template c6aefB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
Confidence and coverage
Confidence: 98.3% Coverage: 40%
66 residues ( 40% of your sequence) have been modelled with 98.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6aefB_



98.3 36
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
2c6ehrF_



70.9 7
PDB header:signaling protein
Chain: F: PDB Molecule:ras-related gtp-binding protein a;
PDBTitle: the crystal structure of the human lamtor-raga ctd-ragc ctd complex
3c2w91A_



36.6 38
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase d;
PDBTitle: structure of a streptococcus pneumoniae family 85 glycoside2 hydrolase, endo-d.
4c3gdbA_



34.9 38
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein spr0440;
PDBTitle: crystal structure of spr0440 glycoside hydrolase domain,2 endo-d from streptococcus pneumoniae r6
5d3e9va1



20.5 18
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
6c3fhaD_



17.9 60
PDB header:hydrolase
Chain: D: PDB Molecule:endo-beta-n-acetylglucosaminidase;
PDBTitle: structure of endo-beta-n-acetylglucosaminidase a
7c5y88V_



16.9 23
PDB header:splicing
Chain: V: PDB Molecule:pre-mrna-splicing factor ntr2;
PDBTitle: cryo-em structure of the intron-lariat spliceosome ready for2 disassembly from s.cerevisiae at 3.5 angstrom
8c4gu4B_



16.3 17
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus attachment protein sigma1 in2 complex with alpha-2,3-sialyllactose
9c5dijA_



16.3 6
PDB header:unknown function
Chain: A: PDB Molecule:tqaa;
PDBTitle: the crystal structure of ct
10c3rlcA_



13.8 23
PDB header:structural protein
Chain: A: PDB Molecule:a1 protein;
PDBTitle: crystal structure of the read-through domain from bacteriophage qbeta2 a1 protein, hexagonal crystal form
11c5t3eA_



12.9 9
PDB header:ligase
Chain: A: PDB Molecule:bacillamide synthetase heterocyclization domain;
PDBTitle: crystal structure of a nonribosomal peptide synthetase2 heterocyclization domain.
12d1kkea2



11.7 30
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Reovirus attachment protein sigma 1 head domain
13d2z15a1



10.9 21
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
14c4chjA_



10.6 29
PDB header:cell cycle
Chain: A: PDB Molecule:imc sub-compartment protein isp3;
PDBTitle: structure of inner membrane complex (imc) sub-compartment2 protein 3 (isp3) from toxoplasma gondii
15d1r46a2



10.0 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
16c4cu9A_



9.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: unravelling the multiple functions of the architecturally2 intricate streptococcus pneumoniae beta-galactosidase, bgaa
17c2n8kA_



9.6 26
PDB header:toxin
Chain: A: PDB Molecule:u33-theraphotoxin-cg1b;
PDBTitle: chemical shift assignments and structure determination for spider2 toxin, u33-theraphotoxin-cg1c
18c3kwrA_



8.6 25
PDB header:rna binding protein
Chain: A: PDB Molecule:putative rna-binding protein;
PDBTitle: crystal structure of putative rna-binding protein (np_785364.1) from2 lactobacillus plantarum at 1.45 a resolution
19d1a4ia1



8.6 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
20c5td6A_



8.5 9
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
21c1kkeA_



not modelled 8.2 30
PDB header:viral protein
Chain: A: PDB Molecule:sigma 1 protein;
PDBTitle: crystal structure of reovirus attachment protein sigma12 trimer
22c6av8A_



not modelled 7.8 80
PDB header:toxin
Chain: A: PDB Molecule:u5-theraphotoxin-hs1b 1;
PDBTitle: exploring cystine dense peptide space to open a unique molecular2 toolbox
23c2aapA_



not modelled 7.5 80
PDB header:toxin
Chain: A: PDB Molecule:jingzhaotoxin-vii;
PDBTitle: solution structure of jingzhaotoxin-vii
24c3qmlC_



not modelled 7.5 26
PDB header:chaperone/protein transport
Chain: C: PDB Molecule:nucleotide exchange factor sil1;
PDBTitle: the structural analysis of sil1-bip complex reveals the mechanism for2 sil1 to function as a novel nucleotide exchange factor
25c3ushB_



not modelled 7.2 35
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q2s0r5 protein from salinibacter ruber,2 northeast structural genomics consortium target srr207
26c4chmB_



not modelled 7.0 12
PDB header:cell cycle
Chain: B: PDB Molecule:imc sub-compartment protein isp1;
PDBTitle: structure of inner membrane complex (imc) sub-compartment protein 12 (isp1) from toxoplasma gondii
27c3l07B_



not modelled 6.4 21
PDB header:oxidoreductase,hydrolase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis.
28c3s6xA_



not modelled 6.3 30
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: structure of reovirus attachment protein sigma1 in complex with alpha-2 2,3-sialyllactose
29c1a4iB_



not modelled 6.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase /
PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase
30c5oltA_



not modelled 6.0 44
PDB header:transferase
Chain: A: PDB Molecule:cellulose biosynthesis protein bcsg;
PDBTitle: crystal structure of the extramembrane domain of the cellulose2 biosynthetic protein bcsg from salmonella typhimurium
31d1a6qa1



not modelled 5.9 38
Fold:Another 3-helical bundle
Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain
Family:Protein serine/threonine phosphatase 2C, C-terminal domain
32c2lq3A_



not modelled 5.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of syc0711_d from synechococcus sp., northeast2 structural genomics consortium (nesg) target snr212
33c3e2sA_



not modelled 5.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure reduced puta86-630 mutant y540s complexed with l-2 proline
34c5yvuA_



not modelled 5.3 38
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: crystal structures of unlinked full length ns3 from dengue virus2 provide insights into dynamics of protease domain
35d1p42a1



not modelled 5.3 28
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
36c2n59A_



not modelled 5.3 67
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein csgh;
PDBTitle: solution structure of r. palustris csgh
37c4iohA_



not modelled 5.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tll1086 protein;
PDBTitle: crystal structure of the tll1086 protein from thermosynechococcus2 elongatus, northeast structural genomics consortium target ter258
38c5i8iD_



not modelled 5.1 22
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
39d1o5wa2



not modelled 5.0 13
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:L-aminoacid/polyamine oxidase
40c2k1kA_



not modelled 5.0 100
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
41c2k1kB_



not modelled 5.0 100
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
42c2k1lA_



not modelled 5.0 100
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3

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