Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1531_(-)_1732479_1733045
DateFri Aug 2 13:30:12 BST 2019
Unique Job ID05b19f2eec40a38a
SequenceMTTSRVPLLP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.865 Y:55.693 Z:43.960
Model (left) based on template c3c1lB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 96%
180 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c1lB_



100.0 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
2c3lvyB_



100.0 14
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
3d2pfxa1



100.0 9
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
4d2prra1



100.0 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
5d2oyoa1



100.0 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
6c6ohiA_



100.0 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
7d2gmya1



100.0 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
8d2o4da1



100.0 25
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
9d2ouwa1



99.9 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
10c5dj4D_



99.8 14
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
11c2qeuA_



99.3 16
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
12c3beyC_



99.3 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
13c5dipB_



99.3 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
14c1p8cD_



99.3 21
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
15d2q0ta1



99.2 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
16d2cwqa1



99.2 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
17d1vkea_



99.2 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
18c3d7iB_



99.1 20
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
19d1vkeb_



98.9 21
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
20c4g9qA_



98.8 20
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
21d1knca_



not modelled 98.8 12
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
22c5gzxD_



not modelled 98.3 8
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
23d2af7a1



not modelled 97.8 29
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
24d1a9xa1



not modelled 87.2 14
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
25d2p7vb1



not modelled 56.1 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
26d1ngra_



not modelled 47.4 15
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
27c5dotA_



not modelled 44.0 9
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
28c6ac5A_



not modelled 43.5 9
PDB header:signaling protein
Chain: A: PDB Molecule:receptor-interacting serine/threonine-protein kinase 1;
PDBTitle: crystal structure of ripk1 death domain glcnacylated by epec effector2 nleb
29c5douC_



not modelled 38.8 9
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
30c4wt3A_



not modelled 37.6 15
PDB header:chaperone
Chain: A: PDB Molecule:rubisco accumulation factor 1, isoform 2;
PDBTitle: the n-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana
31c1m6vE_



not modelled 37.0 14
PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
32d1ddfa_



not modelled 36.9 9
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
33c4o6xA_



not modelled 35.2 9
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-3;
PDBTitle: crystal structure of human ankyrin g death domain
34c2ib1A_



not modelled 35.1 12
PDB header:apoptosis
Chain: A: PDB Molecule:death domain containing membrane protein nradd;
PDBTitle: solution structure of p45 death domain
35d1khda1



not modelled 35.0 9
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
36c1ichA_



not modelled 26.6 13
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor-1;
PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain
37d1icha_



not modelled 26.6 13
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
38d1fada_



not modelled 25.3 15
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
39c4n2xF_



not modelled 25.0 12
PDB header:hydrolase
Chain: F: PDB Molecule:dl-2-haloacid dehalogenase;
PDBTitle: crystal structure of dl-2-haloacid dehalogenase
40c1wxpA_



not modelled 24.4 13
PDB header:transport protein
Chain: A: PDB Molecule:tho complex subunit 1;
PDBTitle: solution structure of the death domain of nuclear matrix2 protein p84
41c2yqfA_



not modelled 23.3 8
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: solution structure of the death domain of ankyrin-1
42c6mtgB_



not modelled 23.2 9
PDB header:transferase
Chain: B: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: a single reactive noncanonical amino acid is able to dramatically2 stabilize protein structure
43d1ttya_



not modelled 23.2 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
44d1ku3a_



not modelled 22.9 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
45c3oq9C_



not modelled 22.0 7
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: structure of the fas/fadd death domain assembly
46c2of5A_



not modelled 20.2 16
PDB header:apoptosis
Chain: A: PDB Molecule:death domain-containing protein cradd;
PDBTitle: oligomeric death domain complex
47c3k2zA_



not modelled 18.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima
48d1p4wa_



not modelled 18.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
49c2k8sA_



not modelled 17.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6
50d1ku7a_



not modelled 17.5 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
51c3t72o_



not modelled 17.3 17
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
52c3gmfA_



not modelled 16.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein-disulfide isomerase;
PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans
53c3t5vC_



not modelled 15.9 19
PDB header:transcription
Chain: C: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: sac3:thp1:sem1 complex
54c3dvwA_



not modelled 15.4 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis
55c2of5K_



not modelled 15.1 15
PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing protein;
PDBTitle: oligomeric death domain complex
56c2k9lA_



not modelled 15.0 20
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
57d1brwa1



not modelled 14.7 14
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
58c3f4tA_



not modelled 14.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a
59c5lc5E_



not modelled 13.9 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: structure of mammalian respiratory complex i, class2
60c3bjxB_



not modelled 13.9 11
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
61c3l9vE_



not modelled 13.8 11
PDB header:oxidoreductase
Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin;
PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga
62d1o17a1



not modelled 13.8 14
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
63d1uoua1



not modelled 13.6 7
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
64c3bciA_



not modelled 13.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:disulfide bond protein a;
PDBTitle: crystal structure of staphylococcus aureus dsba
65d1v8ga1



not modelled 13.5 7
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
66c1t3bA_



not modelled 13.3 33
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
67d1smyf2



not modelled 13.0 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
68d1t3ba1



not modelled 12.6 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
69d2gf5a1



not modelled 12.5 14
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
70c2k9mA_



not modelled 12.0 20
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
71c4npbA_



not modelled 11.6 33
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
72c3c7mB_



not modelled 11.1 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like;
PDBTitle: crystal structure of reduced dsbl
73c1v57A_



not modelled 10.7 17
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
74c4igcX_



not modelled 10.6 23
PDB header:transcription, transferase
Chain: X: PDB Molecule:rna polymerase sigma factor rpod;
PDBTitle: x-ray crystal structure of escherichia coli sigma70 holoenzyme
75c1jzdA_



not modelled 10.3 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
76d1x4pa1



not modelled 10.0 13
Fold:Surp module (SWAP domain)
Superfamily:Surp module (SWAP domain)
Family:Surp module (SWAP domain)
77c3hd5A_



not modelled 9.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis
78c4k2dA_



not modelled 9.9 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: crystal structure of burkholderia pseudomallei dsba
79c4nxiB_



not modelled 9.8 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: rv2466c mediates the activation of tp053 to kill replicating and non-2 replicating mycobacterium tuberculosis
80c1a6bB_



not modelled 9.7 33
PDB header:viral protein/dna
Chain: B: PDB Molecule:zinc finger protein ncp10;
PDBTitle: nmr structure of the complex between the zinc finger2 protein ncp10 of moloney murine leukemia virus and a3 sequence of the psi-packaging domain of hiv-1, 204 structures
81c4ml1D_



not modelled 9.7 8
PDB header:isomerase
Chain: D: PDB Molecule:dsbp;
PDBTitle: disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
82c4xvwK_



not modelled 9.6 17
PDB header:isomerase
Chain: K: PDB Molecule:dsba-like protein;
PDBTitle: crystal structure of proteus mirabilis scsc in a compact conformation
83d2tpta1



not modelled 9.5 7
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
84c1x4pA_



not modelled 9.5 13
PDB header:rna binding protein
Chain: A: PDB Molecule:putative splicing factor, arginine/serine-rich
PDBTitle: solution structure of surp domain in sfrs14 protei
85c3wodF_



not modelled 9.1 22
PDB header:transferase/transcription
Chain: F: PDB Molecule:rna polymerase sigma factor;
PDBTitle: rna polymerase-gp39 complex
86c4n30A_



not modelled 9.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein disulfide isomerase;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba2
87c3iydF_



not modelled 9.0 20
PDB header:transcription/dna
Chain: F: PDB Molecule:rna polymerase sigma factor rpod;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
88c5tw1F_



not modelled 8.9 22
PDB header:transcription activator/transferase/dna
Chain: F: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
89c2ev2B_



not modelled 8.8 22
PDB header:lyase
Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5
90c1vquB_



not modelled 8.8 17
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution
91c6c05F_



not modelled 8.8 20
PDB header:transcription
Chain: F: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: mycobacterium tuberculosis rnap holo/rbpa in relaxed state
92c5hfiA_



not modelled 8.7 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein, cytosolic disulfide reductase
PDBTitle: cytosolic disulfide reductase dsbm from pseudomonas aeruginosa with2 gsh
93d1beda_



not modelled 8.7 12
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
94c3h93A_



not modelled 8.7 8
PDB header:transcription regulator
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba
95c3gv1A_



not modelled 8.5 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
96c4k90A_



not modelled 8.5 63
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular metalloproteinase mep;
PDBTitle: extracellular metalloproteinase from aspergillus
97c3msuA_



not modelled 8.4 13
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from francisella tularensis
98d1eeja1



not modelled 8.4 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
99c3o0rC_



not modelled 8.3 17
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment

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Transmembrane helix prediction 

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