Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1539_(lspA)_1742250_1742858
DateFri Aug 2 13:30:12 BST 2019
Unique Job ID57a923591a315621
SequenceVPDEPTGSAD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.875 Y:43.614 Z:43.869
Model (left) based on template c5dirD_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:lipoprotein signal peptidase;
PDBTitle: membrane protein at 2.8 angstroms
Confidence and coverage
Confidence:100.0% Coverage: 68%
138 residues ( 68% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5dirD_



100.0 38
PDB header:hydrolase
Chain: D: PDB Molecule:lipoprotein signal peptidase;
PDBTitle: membrane protein at 2.8 angstroms
2c5dirB_



100.0 36
PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein signal peptidase;
PDBTitle: membrane protein at 2.8 angstroms
3c6btmC_



83.7 11
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
4c2kncA_



43.1 25
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
5d2oara1



36.5 23
Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
6c3qnqD_



26.3 20
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
7c2mfrA_



18.7 23
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
8c6f0kC_



16.8 13
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
9c5ireA_



16.7 24
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
10c6fkip_



15.8 7
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
11c5v8kB_



14.0 56
PDB header:photosynthesis
Chain: B: PDB Molecule:proteinsubunit pshx;
PDBTitle: homodimeric reaction center of h. modesticaldum
12c6iuhC_



12.0 33
PDB header:protein binding
Chain: C: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of git1 pbd domain in complex with liprin-alpha2
13c3rb8A_



11.9 19
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of the phage tubulin phuz(semet)-gdp
14c6btmF_



10.6 9
PDB header:membrane protein
Chain: F: PDB Molecule:alternative complex iii subunit f;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
15d2d5ba1



10.2 46
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
16c2d46A_



10.1 37
PDB header:metal transport
Chain: A: PDB Molecule:calcium channel, voltage-dependent, beta 4
PDBTitle: solution structure of the human beta4a-a domain
17c2oarA_



9.6 23
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
18c6f0kF_



9.1 16
PDB header:membrane protein
Chain: F: PDB Molecule:actf;
PDBTitle: alternative complex iii
19c6oitG_



8.4 26
PDB header:plant protein
Chain: G: PDB Molecule:protein chromatin remodeling 35;
PDBTitle: cryoem structure of arabidopsis ddr' complex (drd1 peptide-dms3-rdm1)
20c3hzqA_



7.8 15
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of a tetrameric mscl in an expanded intermediate state
21c3uzeC_



not modelled 7.4 21
PDB header:immune system
Chain: C: PDB Molecule:envelope protein;
PDBTitle: crystal structure of the dengue virus serotype 3 envelope protein2 domain iii in complex with the variable domains of mab 4e11
22c4y7jE_



not modelled 7.3 32
PDB header:membrane protein,transport protein
Chain: E: PDB Molecule:large conductance mechanosensitive channel protein,
PDBTitle: structure of an archaeal mechanosensitive channel in expanded state
23d1s7ba_



not modelled 7.3 9
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
24c3b9bA_



not modelled 6.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase
25c1p58C_



not modelled 6.7 16
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
26c6iz4G_



not modelled 6.3 20
PDB header:membrane protein
Chain: G: PDB Molecule:trimeric intracellular cation channel type b-b;
PDBTitle: crystal structure analysis of tric counter-ion channels in calcium2 release
27c2voyC_



not modelled 5.8 28
PDB header:hydrolase
Chain: C: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
28d1ft8e_



not modelled 5.8 11
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Non-canonical RBD domain
29c1x4pA_



not modelled 5.6 28
PDB header:rna binding protein
Chain: A: PDB Molecule:putative splicing factor, arginine/serine-rich
PDBTitle: solution structure of surp domain in sfrs14 protei

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below