Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1545_(-)_1746925_1747152
DateFri Aug 2 13:30:13 BST 2019
Unique Job IDb9fbec2241432602
SequenceVPNGVLGLGN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.265 Y:33.385 Z:21.437
Model (left) based on template c3htuE_
Top template information
PDB header:protein transport
Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: crystal structure of the human vps25-vps20 subcomplex
Confidence and coverage
Confidence: 32.8% Coverage: 63%
47 residues ( 63% of your sequence) have been modelled with 32.8% confidence by the single highest scoring template.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3htuE_



32.8 21
PDB header:protein transport
Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: crystal structure of the human vps25-vps20 subcomplex
2c2wtoB_



18.9 33
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
3c6j05B_



17.8 23
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression
4d1kxpd3



16.8 31
Fold:Serum albumin-like
Superfamily:Serum albumin-like
Family:Serum albumin-like
5d1zj8a2



16.6 20
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
6c2va0E_



16.1 34
PDB header:transferase
Chain: E: PDB Molecule:abfs arabinofuranosidase two component system sensor
PDBTitle: differential regulation of the xylan degrading apparatus of2 cellvibrio japonicus by a novel two component system
7c3cuqC_



14.3 21
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
8c3v2iA_



13.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis
9d2ptha_



12.8 32
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
10c4ok7A_



11.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:endolysin;
PDBTitle: structure of bacteriophage spn1s endolysin from salmonella typhimurium
11d2akja2



10.8 23
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
12c1zj8B_



10.6 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein
13c2luyA_



10.5 33
PDB header:dna binding protein
Chain: A: PDB Molecule:meiotic chromosome segregation protein p8b7.28c;
PDBTitle: solution structure of the tandem zinc finger domain of fission yeast2 stc1
14c4uqfB_



10.0 32
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
15c2m6oA_



9.8 38
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
16c5c7eB_



8.9 27
PDB header:transcription
Chain: B: PDB Molecule:aspr2 protein;
PDBTitle: crystal structure of the rice topless related protein 2 (tpr2) n-2 terminal domain (1-209) in complex with arabidopsis iaa10 peptide
17d1aopa1



8.8 22
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
18c4q55B_



7.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, streptococcus pyogenes at 2.19a resolution shows the3 closed structure of the substrate binding cleft
19c4dhwA_



7.7 44
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from pseudomonas2 aeruginosa with adipic acid at 2.4 angstrom resolution
20d1b8ta1



7.7 55
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
21d1zj8a1



not modelled 7.5 17
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
22c4fopA_



not modelled 7.2 44
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from acinetobacter2 baumannii at 1.86 a resolution
23c1m4eA_



not modelled 6.0 38
PDB header:antimicrobial protein
Chain: A: PDB Molecule:hepcidin;
PDBTitle: solution structure of hepcidin-20
24c2kefA_



not modelled 5.8 60
PDB header:antibiotic, hormone
Chain: A: PDB Molecule:hepcidin;
PDBTitle: solution nmr structures of human hepcidin at 325k
25c2zkzC_



not modelled 5.7 21
PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
26c4qaeT_



not modelled 5.7 60
PDB header:transport protein/signaling protein
Chain: T: PDB Molecule:hepcidin;
PDBTitle: crystal structure of an engineered lipocalin (anticalin) in complex2 with human hepcidin
27c1m4fA_



not modelled 5.6 60
PDB header:antimicrobial protein
Chain: A: PDB Molecule:hepcidin;
PDBTitle: solution structure of hepcidin-25
28c4qaeR_



not modelled 5.6 60
PDB header:transport protein/signaling protein
Chain: R: PDB Molecule:hepcidin;
PDBTitle: crystal structure of an engineered lipocalin (anticalin) in complex2 with human hepcidin
29c4qaeS_



not modelled 5.6 60
PDB header:transport protein/signaling protein
Chain: S: PDB Molecule:hepcidin;
PDBTitle: crystal structure of an engineered lipocalin (anticalin) in complex2 with human hepcidin
30c4qaeQ_



not modelled 5.6 60
PDB header:transport protein/signaling protein
Chain: Q: PDB Molecule:hepcidin;
PDBTitle: crystal structure of an engineered lipocalin (anticalin) in complex2 with human hepcidin
31c4qaeP_



not modelled 5.5 60
PDB header:transport protein/signaling protein
Chain: P: PDB Molecule:hepcidin;
PDBTitle: crystal structure of an engineered lipocalin (anticalin) in complex2 with human hepcidin
32d2csha2



not modelled 5.3 57
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33c5ijaB_



not modelled 5.2 29
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase-specific maturation endopeptidase;
PDBTitle: [nife] hydrogenase maturation protease hybd from thermococcus2 kodakarensis
34c5h92A_



not modelled 5.0 17
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:sulfite reductase [ferredoxin], chloroplastic;
PDBTitle: crystal structure of the complex between maize sulfite reductase and2 ferredoxin in the form-3 crystal

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