Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1547_(dnaE)_1747700_1751254
DateFri Aug 2 13:30:13 BST 2019
Unique Job ID94a68f2e773b2972
SequenceMSGSSAGSSF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:97.995 Y:102.741 Z:103.251
Model (left) based on template c5fkvA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
Confidence and coverage
Confidence:100.0% Coverage: 94%
1114 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5fkvA_
100.0 37
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
2c3e0dA_
100.0 42
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit
3c5lewA_
100.0 99
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: dna polymerase
4c2hnhA_
100.0 40
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii alpha subunit;
PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii
5c3f2cA_
100.0 27
PDB header:transferase/dna
Chain: A: PDB Molecule:geobacillus kaustophilus dna polc;
PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn
6c4gx9A_
100.0 37
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit epsilon,dna polymerase iii
PDBTitle: crystal structure of a dna polymerase iii alpha-epsilon chimera
7c3e0fA_
99.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent phosphoesterase;
PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution
8c2wjeA_
99.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb;
PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4.
9c3dcpB_
99.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of the putative histidinol phosphatase hisk from2 listeria monocytogenes. northeast structural genomics consortium3 target lmr141.
10c2yb1A_
99.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
11c3qy6A_
99.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe;
PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases
12c2yz5B_
99.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol phosphatase;
PDBTitle: histidinol phosphate phosphatase complexed with phosphate
13c3umuA_
99.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of l-histidinol phosphate phosphatase (hisk) from2 lactococcus lactis subsp. lactis il1403 complexed with zn, phosphate3 and l-histidinol
14c3auoB_
99.5 15
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
15d1m65a_
99.3 18
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:PHP domain
16c2anuA_
99.2 19
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein tm0559;
PDBTitle: crystal structure of predicted metal-dependent phosphoesterase (php2 family) (tm0559) from thermotoga maritima at 2.40 a resolution
17d2anua1
99.2 19
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:PHP domain
18c5zb8B_
99.1 19
PDB header:dna binding protein
Chain: B: PDB Molecule:pfuendoq;
PDBTitle: crystal structure of the novel lesion-specific endonuclease pfuendoq2 from pyrococcus furiosus
19c2w9mB_
99.0 18
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
20c3e38A_
98.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal-
PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution
21c4joiA_
not modelled 97.8 20
PDB header:dna binding protein
Chain: A: PDB Molecule:cst complex subunit stn1;
PDBTitle: crystal structure of the human telomeric stn1-ten1 complex
22c6k0aC_
not modelled 97.7 14
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ribonuclease p protein component 3;
PDBTitle: cryo-em structure of an archaeal ribonuclease p
23d1e1oa1
not modelled 97.6 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
24c3kf6A_
not modelled 97.6 21
PDB header:structural protein
Chain: A: PDB Molecule:protein stn1;
PDBTitle: crystal structure of s. pombe stn1-ten1 complex
25d1c0aa1
not modelled 97.6 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
26c6ns0A_
not modelled 97.6 16
PDB header:ligase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from chlamydia trachomatis2 complexed with l-lysine and cladosporin
27c5hgqD_
not modelled 97.5 13
PDB header:ligase/ligase inhibitor
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: loa loa lysyl-trna synthetase in complex with cladosporin.
28d1b8aa1
not modelled 97.5 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
29c5zg8A_
not modelled 97.5 20
PDB header:ligase
Chain: A: PDB Molecule:asparagine--trna ligase;
PDBTitle: crystal structure of ttnrs
30d1gm5a2
not modelled 97.5 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecG "wedge" domain
31c4upaA_
not modelled 97.5 12
PDB header:ligase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of entamoeba histolytica lysyl-trna synthetase in2 complex with amppnp
32d1bbua1
not modelled 97.5 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
33c3i7fA_
not modelled 97.5 12
PDB header:ligase
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: aspartyl trna synthetase from entamoeba histolytica
34c1b8aB_
not modelled 97.5 15
PDB header:ligase
Chain: B: PDB Molecule:protein (aspartyl-trna synthetase);
PDBTitle: aspartyl-trna synthetase
35c4ex5A_
not modelled 97.5 11
PDB header:transferase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase lysrs from burkholderia2 thailandensis bound to lysine
36c4h02B_
not modelled 97.5 12
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of p. falciparum lysyl-trna synthetase
37c4gopB_
not modelled 97.5 20
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
38c3bjuB_
not modelled 97.5 14
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of tetrameric form of human lysyl-trna synthetase
39c4owxB_
not modelled 97.5 15
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:soss complex subunit b1;
PDBTitle: structural basis of soss1 in complex with a 12nt ssdna
40c4up8A_
not modelled 97.4 15
PDB header:ligase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of entamoeba histolytica lysyl-trna synthetase apo2 form
41c1x55A_
not modelled 97.4 16
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase;
PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue
42d2edua1
not modelled 97.4 22
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:ComEA-like
43c3e9hB_
not modelled 97.4 17
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine
44c5elnC_
not modelled 97.4 12
PDB header:ligase
Chain: C: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from cryptosporidium parvum2 complexed with l-lysine
45c5vl1D_
not modelled 97.4 25
PDB header:ligase
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from mycobacterium ulcerans2 complexed with l-lysine
46c4j15A_
not modelled 97.4 13
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human cytosolic aspartyl-trna synthetase, a2 component of multi-trna synthetase complex
47c5groA_
not modelled 97.3 19
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna(asp/asn) ligase;
PDBTitle: crystal structure of the n-terminal anticodon-binding domain of non-2 discriminating aspartyl-trna synthetase from helicobacter pylori
48c1eqrC_
not modelled 97.3 24
PDB header:ligase
Chain: C: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli
49c4o2dB_
not modelled 97.3 23
PDB header:ligase
Chain: B: PDB Molecule:aspartate--trna ligase;
PDBTitle: crystal structure of aspartyl-trna synthetase from mycobacterium2 smegmatis with bound aspartic acid
50c6od8A_
not modelled 97.3 19
PDB header:ligase
Chain: A: PDB Molecule:putative aspartyl-trna synthetase;
PDBTitle: crystal structure of a putative aspartyl-trna synthetase from2 leishmania major friedlin
51c3dm3A_
not modelled 97.3 17
PDB header:replication
Chain: A: PDB Molecule:replication factor a;
PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e
52c2xgtB_
not modelled 97.2 17
PDB header:ligase
Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic;
PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate
53c3m4qA_
not modelled 97.2 11
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative;
PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs)
54c4gn5A_
not modelled 97.2 18
PDB header:de novo protein/hydrolase
Chain: A: PDB Molecule:obody am3l15;
PDBTitle: obody am3l15 bound to hen egg-white lysozyme
55c3e0eA_
not modelled 97.2 11
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
56c1wydB_
not modelled 97.2 18
PDB header:ligase
Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii
57c1e22A_
not modelled 97.2 12
PDB header:ligase
Chain: A: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp
58d1l0wa1
not modelled 97.1 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
59c5xixD_
not modelled 97.1 19
PDB header:ligase
Chain: D: PDB Molecule:asparagine--trna ligase, cytoplasmic;
PDBTitle: the canonical domain of human asparaginyl-trna synthetase
60c4wj4A_
not modelled 97.1 23
PDB header:ligase/rna
Chain: A: PDB Molecule:aspartate--trna(asp/asn) ligase;
PDBTitle: crystal structure of non-discriminating aspartyl-trna synthetase from2 pseudomonas aeruginosa complexed with trna(asn) and aspartic acid
61c2k50A_
not modelled 97.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:replication factor a related protein;
PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a.
62d2pi2a1
not modelled 97.1 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
63c1asyA_
not modelled 97.0 12
PDB header:complex (aminoacyl-trna synthase/trna)
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp
64d1n9wa1
not modelled 97.0 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
65d1eova1
not modelled 97.0 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
66c2pi2A_
not modelled 97.0 17
PDB header:replication, dna binding protein
Chain: A: PDB Molecule:replication protein a 32 kda subunit;
PDBTitle: full-length replication protein a subunits rpa14 and rpa32
67c1efwA_
not modelled 96.9 16
PDB header:ligase/rna
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli
68c4glaD_
not modelled 96.8 19
PDB header:hydrolase/de novo protein
Chain: D: PDB Molecule:obody nl8;
PDBTitle: obody nl8 bound to hen egg-white lysozyme
69d1o7ia_
not modelled 96.8 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
70c1n9wA_
not modelled 96.7 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:aspartyl-trna synthetase 2;
PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus
71c4ah6B_
not modelled 96.7 18
PDB header:ligase
Chain: B: PDB Molecule:aspartate--trna ligase, mitochondrial;
PDBTitle: human mitochondrial aspartyl-trna synthetase
72c3vdyA_
not modelled 96.7 19
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded dna-binding protein ssbb;
PDBTitle: b. subtilis ssbb/ssdna
73c3kf8C_
not modelled 96.6 15
PDB header:structural protein
Chain: C: PDB Molecule:protein stn1;
PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex
74c5iheB_
not modelled 96.6 20
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase ii small subunit;
PDBTitle: d-family dna polymerase - dp1 subunit (3'-5' proof-reading2 exonuclease)
75d2i5ha1
not modelled 96.5 15
Fold:AF1531-like
Superfamily:AF1531-like
Family:AF1531-like
76c2i5hA_
not modelled 96.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1531;
PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655
77c3eivB_
not modelled 96.4 16
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein 2;
PDBTitle: crystal structure of single-stranded dna-binding protein2 from streptomyces coelicolor
78c6i52B_
not modelled 96.3 18
PDB header:dna binding protein
Chain: B: PDB Molecule:replication factor a protein 2;
PDBTitle: yeast rpa bound to ssdna
79c1z9fA_
not modelled 96.3 15
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution
80d1xjva1
not modelled 96.3 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
81c3tqyA_
not modelled 96.3 24
PDB header:transferase
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: structure of a single-stranded dna-binding protein (ssb), from2 coxiella burnetii
82c1gm5A_
not modelled 96.3 15
PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
83c5ol9A_
not modelled 96.3 19
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor, mitochondrial;
PDBTitle: structure of human mitochondrial transcription elongation factor2 (tefm) n-terminal domain
84c1ynxA_
not modelled 96.2 16
PDB header:dna binding protein
Chain: A: PDB Molecule:replication factor-a protein 1;
PDBTitle: solution structure of dna binding domain a (dbd-a) of2 s.cerevisiae replication protein a (rpa)
85c2k75A_
not modelled 96.2 20
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ta0387;
PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b.
86c2cwaA_
not modelled 96.1 17
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of the single-stranded dna binding protein from2 thermus thermophilus hb8
87d1krta_
not modelled 96.1 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
88d1v1qa_
not modelled 96.0 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
89c5xgtA_
not modelled 96.0 18
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of the n-terminal domain of staphylococcus aureus2 single-stranded dna-binding protein ssba at 1.82 angstrom resolution
90c2kenA_
not modelled 96.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a.
91d1eyga_
not modelled 95.8 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
92c5odnG_
not modelled 95.8 15
PDB header:dna binding protein
Chain: G: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: salinibacter ruber single-strand binding protein
93c1xjvA_
not modelled 95.7 14
PDB header:transcription/dna
Chain: A: PDB Molecule:protection of telomeres 1;
PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag)
94d1wjja_
not modelled 95.7 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
95c2iheA_
not modelled 95.7 15
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of wild-type single-stranded dna binding protein2 from thermus aquaticus
96d3bzka1
not modelled 95.6 18
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
97d1qvca_
not modelled 95.6 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
98c1qvcA_
not modelled 95.6 20
PDB header:dna binding protein
Chain: A: PDB Molecule:single stranded dna binding protein monomer;
PDBTitle: crystal structure analysis of single stranded dna binding protein2 (ssb) from e.coli
99d1jmca1
not modelled 95.6 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
100c1fguA_
not modelled 95.5 18
PDB header:replication
Chain: A: PDB Molecule:replication protein a 70 kda dna-binding subunit;
PDBTitle: ssdna-binding domain of the large subunit of replication2 protein a
101c3kojA_
not modelled 95.4 8
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ycf41;
PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein from2 synechococcus sp. northeast structural genomics consortium target3 snr59a.
102c2ihfA_
not modelled 95.4 13
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus
103d1se8a_
not modelled 95.0 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
104c1se8A_
not modelled 95.0 14
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: structure of single-stranded dna-binding protein (ssb) from d.2 radiodurans
105d1ue1a_
not modelled 94.9 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
106c1s5lu_
not modelled 94.9 17
PDB header:photosynthesis
Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
107c5gqoB_
not modelled 94.8 10
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: structure of the second single stranded dna binding protein (ssbb)2 from mycobacterium smegmatis
108d3ulla_
not modelled 94.7 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
109c3lgjA_
not modelled 94.6 15
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of single-stranded binding protein (ssb) from2 bartonella henselae
110c1ue7A_
not modelled 94.5 13
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of the single-stranded dna-binding2 protein from mycobacterium tuberculosis
111d1qzga_
not modelled 94.3 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
112c5vbnE_
not modelled 94.3 16
PDB header:transferase
Chain: E: PDB Molecule:dna polymerase epsilon subunit 2;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit
113c1k8gC_
not modelled 94.2 8
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:telomere-binding protein alpha subunit;
PDBTitle: crystal structure of the n-terminal domain of oxytricha2 nova telomere end binding protein alpha subunit both3 uncomplexed and complexed with telomeric ssdna
114c3pgzB_
not modelled 94.2 14
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of a single strand binding protein (ssb) from2 bartonella henselae
115c2vw9B_
not modelled 94.0 20
PDB header:dna-binding protein
Chain: B: PDB Molecule:single-stranded dna binding protein;
PDBTitle: single stranded dna binding protein complex from2 helicobacter pylori
116d1jb7a1
not modelled 93.9 8
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
117c6hv9B_
not modelled 93.9 22
PDB header:dna binding protein
Chain: B: PDB Molecule:dna polymerase epsilon subunit b;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
118c6cqoH_
not modelled 93.8 15
PDB header:dna binding protein
Chain: H: PDB Molecule:single-stranded dna-binding protein rim1, mitochondrial;
PDBTitle: crystal structure of mitochondrial single-stranded dna binding2 proteins from s. cerevisiae (semet labeled), rim1 (form2)
119c6bwyA_
not modelled 93.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:protection of telomeres protein 1, dna dc->du-editing
PDBTitle: dna substrate selection by apobec3g
120d2axtu1
not modelled 93.5 17
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:PsbU-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below