Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1551_(plsB1)_1755451_1757316
DateFri Aug 2 13:30:14 BST 2019
Unique Job ID698f7676ebb46bc0
SequenceVTAREVGRIG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.689 Y:49.438 Z:45.826
Model (left) based on template c5kymA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
Confidence and coverage
Confidence: 99.6% Coverage: 31%
195 residues ( 31% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
260 residues ( 42%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5kymA_



99.6 15
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
2c5f34A_



96.3 12
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannoside acyltransferase;
PDBTitle: crystal structure of membrane associated pata from mycobacterium2 smegmatis in complex with s-hexadecyl coenzyme a - p21 space group
3d1iuqa_



91.5 13
Fold:Glycerol-3-phosphate (1)-acyltransferase
Superfamily:Glycerol-3-phosphate (1)-acyltransferase
Family:Glycerol-3-phosphate (1)-acyltransferase
4c5knkB_



85.7 4
PDB header:transferase
Chain: B: PDB Molecule:lipid a biosynthesis lauroyl acyltransferase;
PDBTitle: lipid a secondary acyltransferase lpxm from acinetobacter baumannii2 with catalytic residue substitution (e127a)
5d1t3la2



44.3 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
6c6az1X_



42.9 19
PDB header:ribosome/antibiotic
Chain: X: PDB Molecule:ribosomal protein s19e;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
7d1m5wa_



41.6 29
Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
8c2jk1A_



41.2 10
PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
9c3zeyO_



40.1 22
PDB header:ribosome
Chain: O: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
10c5xyiT_



39.8 16
PDB header:ribosome
Chain: T: PDB Molecule:ribosomal protein s19e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
11c3iz6S_



39.4 13
PDB header:ribosome
Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
12c3j3aT_



39.1 16
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19;
PDBTitle: structure of the human 40s ribosomal proteins
13d1vyva2



38.9 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
14d1z67a1



37.3 20
Fold:YidB-like
Superfamily:YidB-like
Family:YidB-like
15d1vyua2



37.1 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
16d2dpwa1



32.4 25
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:TTHA0179-like
17d1wj5a_



31.5 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:An Obfc1 domain
18d2v7fa1



30.8 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rps19E-like
19c3jyvT_



30.6 22
PDB header:ribosome
Chain: T: PDB Molecule:s19e protein;
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
20c5xxuT_



29.4 12
PDB header:ribosome
Chain: T: PDB Molecule:ribosomal protein es19;
PDBTitle: small subunit of toxoplasma gondii ribosome
21d1rbla1



not modelled 28.7 11
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
22c3j38T_



not modelled 28.5 22
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
23d1kcfa2



not modelled 28.3 12
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
24c3kcnA_



not modelled 28.1 8
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
25c4yyfC_



not modelled 28.0 20
PDB header:hydrolase
Chain: C: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
26c2m4eA_



not modelled 28.0 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution nmr structure of vv2_0175 from vibrio vulnificus, nesg target2 vnr1 and csgid target idp91333
27d1t0hb_



not modelled 26.9 24
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
28c5g1mA_



not modelled 26.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of nagz from pseudomonas aeruginosa
29c3wo8B_



not modelled 25.4 19
PDB header:hydrolase
Chain: B: PDB Molecule:beta-n-acetylglucosaminidase;
PDBTitle: crystal structure of the beta-n-acetylglucosaminidase from thermotoga2 maritima
30c3tevA_



not modelled 25.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hyrolase, family 3;
PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1
31c1sfeA_



not modelled 22.7 11
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
32c3othB_



not modelled 22.4 28
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
33c5m5iC_



not modelled 22.0 19
PDB header:motor protein
Chain: C: PDB Molecule:kinesin-like protein cut7;
PDBTitle: pseudo-atomic model of microtubule-bound s.pombe kinesin-5 motor2 domain in the amppnp state (based on cryo-electron microscopy3 experiment): the n-terminus conformation allows formation of a cover4 neck bundle.
34c2xznT_



not modelled 21.5 13
PDB header:ribosome
Chain: T: PDB Molecule:rps19e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
35c4g6cA_



not modelled 21.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase 1;
PDBTitle: crystal structure of beta-hexosaminidase 1 from burkholderia2 cenocepacia j2315
36c3hqdB_



not modelled 21.2 21
PDB header:motor protein
Chain: B: PDB Molecule:kinesin-like protein kif11;
PDBTitle: human kinesin eg5 motor domain in complex with amppnp and2 mg2+
37c4zyeA_



not modelled 21.2 22
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase
38c3u6xU_



not modelled 20.5 50
PDB header:viral protein
Chain: U: PDB Molecule:orf48;
PDBTitle: phage tp901-1 baseplate tripod
39d8ruca1



not modelled 19.8 15
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
40d1xl7a2



not modelled 19.7 17
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
41d1q42a_



not modelled 19.7 33
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
42c2ctuA_



not modelled 19.5 60
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 483;
PDBTitle: solution structure of zinc finger domain from human zn2 finger protein 483
43c2fyuE_



not modelled 19.5 27
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
44c1t39A_



not modelled 19.4 17
PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
45c5xcoB_



not modelled 19.4 40
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:ace-arg-arg-arg-arg-cys-pro-leu-tyr-ile-ser-tyr-asp-pro-
PDBTitle: crystal structure of human k-ras g12d mutant in complex with gdp and2 cyclic inhibitory peptide
46c3tzeA_



not modelled 19.3 38
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of a tryptophanyl-trna synthetase from2 encephalitozoon cuniculi bound to tryptophan
47c3nwrA_



not modelled 18.8 22
PDB header:lyase
Chain: A: PDB Molecule:a rubisco-like protein;
PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum
48d1ej7l1



not modelled 17.7 15
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
49c1wrjA_



not modelled 17.6 22
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii
50c4bhcA_



not modelled 17.2 8
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
51c6hwhB_



not modelled 17.0 19
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
52c1p84E_



not modelled 17.0 25
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
53c6bwqB_



not modelled 16.9 15
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
54c2k9iB_



not modelled 16.6 23
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
55d1vm6a3



not modelled 16.5 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
56d1t1ua2



not modelled 16.4 28
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
57c2wbeC_



not modelled 16.2 23
PDB header:structural protein
Chain: C: PDB Molecule:bipolar kinesin krp-130;
PDBTitle: kinesin-5-tubulin complex with amppnp
58c2fynO_



not modelled 16.2 25
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
59d1ndba2



not modelled 15.8 22
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
60c5nbcD_



not modelled 15.8 7
PDB header:dna binding protein
Chain: D: PDB Molecule:ferric uptake regulation protein;
PDBTitle: structure of prokaryotic transcription factors
61c6bdeA_



not modelled 15.8 10
PDB header:signaling protein
Chain: A: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: crystal structure of fe(ii) unliganded h-nox protein mutant a71g from2 k. algicida
62c3v32B_



not modelled 14.9 31
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
63c2l25A_



not modelled 14.8 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: np_888769.1
64d2hs5a1



not modelled 14.4 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
65d2bsqe1



not modelled 14.2 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
66d1svda1



not modelled 14.0 12
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
67c4r1hA_



not modelled 13.6 12
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0741 protein;
PDBTitle: gntr family transcriptional regulator from listeria monocytogenes
68d1j0aa_



not modelled 13.6 14
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
69d3deua1



not modelled 13.4 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
70d1yfba1



not modelled 13.1 7
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
71c3cfyA_



not modelled 13.0 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo repressor2 protein from vibrio parahaemolyticus
72d1sfea1



not modelled 13.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
73d1d7ka2



not modelled 13.0 14
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
74d1jm1a_



not modelled 12.8 21
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
75c6b3yA_



not modelled 12.6 8
PDB header:transport protein
Chain: A: PDB Molecule:denn domain-containing protein 3;
PDBTitle: crystal structure of the ph-like domain from dennd3
76c3dcbA_



not modelled 12.2 25
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein nod;
PDBTitle: crystal structure of the drosophila kinesin family member2 nod in complex with amppnp
77d1tr9a_



not modelled 12.2 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
78c2imgA_



not modelled 12.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion
79d2fy9a1



not modelled 12.0 7
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
80d2doea1



not modelled 12.0 19
Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
81d1whna_



not modelled 11.9 18
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
82c3ic7A_



not modelled 11.7 5
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron
83c5kvrA_



not modelled 11.6 13
PDB header:translation
Chain: A: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: x-ray crystal structure of a fragment (1-75) of a transcriptional2 regulator pdhr from escherichia coli cft073
84c3rgqA_



not modelled 11.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p
85d1riea_



not modelled 11.6 27
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
86c2kiqA_



not modelled 11.5 5
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription elongation regulator 1;
PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150
87c2zviB_



not modelled 11.5 15
PDB header:isomerase
Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate
PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis
88d2c6ya1



not modelled 11.4 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
89c1xl8B_



not modelled 11.3 17
PDB header:transferase
Chain: B: PDB Molecule:peroxisomal carnitine o-octanoyltransferase;
PDBTitle: crystal structure of mouse carnitine octanoyltransferase in2 complex with octanoylcarnitine
90c2nvgA_



not modelled 11.2 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
91c2k5eA_



not modelled 11.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
92c5z2hA_



not modelled 11.2 13
PDB header:membrane protein
Chain: A: PDB Molecule:dictyostelium discoideum mitochondrial calcium uniporter;
PDBTitle: structure of dictyostelium discoideum mitochondrial calcium uniporter2 n-terminal domain(ddmcu-ntd)
93c2vycA_



not modelled 11.1 16
PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
94c5fkzE_



not modelled 11.1 6
PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, constitutive;
PDBTitle: structure of e.coli constitutive lysine decarboxylase
95d3cx5e1



not modelled 11.0 27
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
96d1qnta1



not modelled 11.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
97c3b1dD_



not modelled 10.9 9
PDB header:lyase
Chain: D: PDB Molecule:betac-s lyase;
PDBTitle: crystal structure of betac-s lyase from streptococcus anginosus in2 complex with l-serine: external aldimine form
98c2du9A_



not modelled 10.7 8
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
99d3bwga1



not modelled 10.5 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below