Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1554_(frdC)_1760181_1760561
DateFri Aug 2 13:30:14 BST 2019
Unique Job IDc7a1a7d5a735bd61
SequenceMSAYRQPVER ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.395 Y:38.442 Z:63.790
Model (left) based on template d1kf6c_
Top template information
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
Confidence and coverage
Confidence:100.0% Coverage: 98%
124 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1kf6c_



100.0 31
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
2d1nekd_



96.8 24
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
3d1nekc_



92.7 17
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
4c3vrbG_



88.4 10
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: G: PDB Molecule:cytochrome b-large subunit;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
5c5xmjG_



75.3 12
PDB header:electron transport
Chain: G: PDB Molecule:fumarate reductase respiratory complex;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
6d2bs2c1



68.1 14
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC
7d1kf6d_



53.0 20
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
8c1yq3C_



52.7 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:succinate dehydrogenase cytochrome b, large subunit;
PDBTitle: avian respiratory complex ii with oxaloacetate and ubiquinone
9c2n7iA_



32.8 13
PDB header:hormone receptor
Chain: A: PDB Molecule:prolactin receptor;
PDBTitle: nmr structure of the prolactin receptor transmembrane domain
10c2mb9A_



26.2 5
PDB header:signaling protein
Chain: A: PDB Molecule:b-cell lymphoma/leukemia 10;
PDBTitle: human bcl10 card
11d1lg7a_



24.8 18
Fold:VSV matrix protein
Superfamily:VSV matrix protein
Family:VSV matrix protein
12c2b1wA_



24.0 20
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain protein 4;
PDBTitle: solution structure of the nod1 caspase activating and recruitment2 domain
13c1p58E_



22.6 17
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
14c6e28D_



21.4 27
PDB header:signaling protein
Chain: D: PDB Molecule:caspase recruitment domain-containing protein 9;
PDBTitle: the card9 card domain-swapped dimer
15c2w2rA_



21.4 27
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein;
PDBTitle: structure of the vesicular stomatitis virus matrix protein
16c6j52A_



19.2 19
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-only protein;
PDBTitle: crystal structure of card-only protein in frog virus 3
17c2m5lA_



17.6 47
PDB header:viral protein
Chain: A: PDB Molecule:ns5a protein;
PDBTitle: ns5a308
18c6ajnF_



17.5 33
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
19d3ygsp_



16.9 13
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
20c6n2mA_



16.5 27
PDB header:signaling protein
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 9;
PDBTitle: nmr solution structure of the homodimeric, autoinhibited state of the2 card9 card and first coiled-coil
21c4i16A_



not modelled 16.5 27
PDB header:signaling protein
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 11;
PDBTitle: crystal structure of carma1 card
22c2nz7A_



not modelled 15.3 20
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 4;
PDBTitle: crystal structure analysis of caspase-recruitment domain2 (card) of nod1
23c6gtrD_



not modelled 14.9 36
PDB header:transcription
Chain: D: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat y144f mutant toxin bound to the c-terminus of2 the antitoxin atar and acetyl-coa
24c3katA_



not modelled 14.3 0
PDB header:apoptosis
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 1;
PDBTitle: crystal structure of the card domain of the human nlrp1 protein,2 northeast structural genomics consortium target hr3486e
25c2n7zA_



not modelled 13.6 6
PDB header:transferase
Chain: A: PDB Molecule:receptor-interacting serine/threonine-protein kinase 2;
PDBTitle: solution structure of rip2 card
26d3crda_



not modelled 13.5 25
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
27c2m67A_



not modelled 12.4 18
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
28c2kxwB_



not modelled 12.4 44
PDB header:calcium-binding protein/metal transport
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2
29c2m5eB_



not modelled 12.4 44
PDB header:calcium-binding protein/metal transport
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: structure of the c-domain of calcium-saturated calmodulin bound to the2 iq motif of nav1.2
30c6drpB_



not modelled 12.1 27
PDB header:immune system
Chain: B: PDB Molecule:nlr family card domain-containing protein 4;
PDBTitle: cryo-em structures of asc and nlrc4 card filaments reveal a unified2 mechanism of nucleation and activation of caspase-1
31d1y9ba1



not modelled 11.6 13
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
32c6gtsC_



not modelled 11.6 33
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
33c5fnaD_



not modelled 11.4 13
PDB header:hydrolase
Chain: D: PDB Molecule:caspase-1;
PDBTitle: cryo-em reconstruction of caspase-1 card
34d1dgna_



not modelled 11.3 25
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
35c1p58F_



not modelled 11.2 19
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
36c3j2pD_



not modelled 10.8 18
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
37c5wsnD_



not modelled 10.2 30
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: structure of japanese encephalitis virus
38c6butB_



not modelled 9.8 44
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: solution structure of full-length apo mammalian calmodulin bound to2 the iq motif of the human voltage-gated sodium channel nav1.2
39c2q0oC_



not modelled 9.7 28
PDB header:transcription
Chain: C: PDB Molecule:probable transcriptional repressor tram;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
40c4atbC_



not modelled 8.1 36
PDB header:immune system
Chain: C: PDB Molecule:interleukin enhancer-binding factor 2;
PDBTitle: crystal structure of the nf90-nf45 dimerisation domain2 complex with ctp
41c4fm4C_



not modelled 7.6 14
PDB header:lyase
Chain: C: PDB Molecule:nitrile hydratase alpha subunit;
PDBTitle: wild type fe-type nitrile hydratase from comamonas testosteroni ni1
42d1cy5a_



not modelled 7.4 19
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
43c4cbfB_



not modelled 6.9 28
PDB header:virus
Chain: B: PDB Molecule:m protein;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus
44c5z62N_



not modelled 6.8 25
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
45c1wazA_



not modelled 6.7 16
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
46d1ic8a2



not modelled 5.8 20
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
47c2zidA_



not modelled 5.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
48c3a0hK_



not modelled 5.5 42
PDB header:electron transport
Chain: K: PDB Molecule:photosystem ii reaction center protein k;
PDBTitle: crystal structure of i-substituted photosystem ii complex
49c2voyB_



not modelled 5.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
50c1uokA_



not modelled 5.3 33
PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
51d1uoka2



not modelled 5.2 33
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
52d1kcfa2



not modelled 5.2 23
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below