Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1555_(frdD)_1760558_1760935
DateFri Aug 2 13:30:14 BST 2019
Unique Job ID92fca238ff7fcb5b
SequenceMTPSTSDARS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.244 Y:44.564 Z:57.835
Model (left) based on template d1kf6d_
Top template information
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
Confidence and coverage
Confidence:100.0% Coverage: 90%
113 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1kf6d_



100.0 31
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
2d1nekc_



93.2 12
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
3d1nekd_



72.0 14
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
4c4ymkA_



54.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
5d1kf6c_



50.4 14
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
6c2lj2A_



28.1 37
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: integral membrane core domain of the mercury transporter merf in lipid2 bilayer membranes
7c3vrbG_



25.6 21
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: G: PDB Molecule:cytochrome b-large subunit;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
8c2m67A_



22.9 37
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
9c1ciiA_



17.3 38
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
10c6bm8A_



16.1 32
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
11c2m86A_



15.6 67
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:mco-pmi;
PDBTitle: solution structure of hdm2 with engineered cyclotide
12c5h2sA_



14.5 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:piscidin-4;
PDBTitle: solution structure of tilapia piscidin 4 (tp4) from oreochromis2 niloticus
13c1yq3C_



13.4 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:succinate dehydrogenase cytochrome b, large subunit;
PDBTitle: avian respiratory complex ii with oxaloacetate and ubiquinone
14c2jo1A_



10.1 24
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
15c5xmjG_



9.8 15
PDB header:electron transport
Chain: G: PDB Molecule:fumarate reductase respiratory complex;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
16c2y69Z_



9.7 12
PDB header:electron transport
Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
17d1kwia_



9.5 25
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cathelicidin motif
18d2c52b1



8.5 27
Fold:Nuclear receptor coactivator interlocking domain
Superfamily:Nuclear receptor coactivator interlocking domain
Family:Nuclear receptor coactivator interlocking domain
19c2jp3A_



8.3 29
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
20c5wsnC_



8.2 31
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
21c4kslW_



not modelled 7.9 29
PDB header:hydrolase
Chain: W: PDB Molecule:protein fam105b;
PDBTitle: gumby/fam105b in complex with linear di-ubiquitin
22c5vx3B_



not modelled 7.9 38
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
23c2mkvA_



not modelled 7.6 24
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
24c5z62M_



not modelled 7.2 19
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome c oxidase subunit 8a, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
25c6drmA_



not modelled 7.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:inactive ubiquitin thioesterase fam105a;
PDBTitle: otu domain of fam105a
26d1v54m_



not modelled 6.9 15
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
27c2of6C_



not modelled 6.9 23
PDB header:virus
Chain: C: PDB Molecule:envelope glycoprotein e;
PDBTitle: structure of immature west nile virus
28c5ireA_



not modelled 6.6 23
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
29d1ok8a2



not modelled 6.6 7
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
30c4phtY_



not modelled 6.1 26
PDB header:protein transport
Chain: Y: PDB Molecule:type ii secretion system protein l;
PDBTitle: atpase gspe in complex with the cytoplasmic domain of gspl from the2 vibrio vulnificus type ii secretion system
31c3jcul_



not modelled 6.1 19
PDB header:membrane protein
Chain: L: PDB Molecule:protein photosystem ii reaction center protein l;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
32c1p58C_



not modelled 6.0 8
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
33c4b03A_



not modelled 5.8 15
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
34c6ajjA_



not modelled 5.8 16
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
35c3c00A_



not modelled 5.8 45
PDB header:membrane protein, protein transport
Chain: A: PDB Molecule:escu;
PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain
36c2l8sA_



not modelled 5.7 30
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
37d2bh1a2



not modelled 5.7 26
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Cyto-EpsL domain
38c5nmiK_



not modelled 5.6 46
PDB header:membrane protein
Chain: K: PDB Molecule:arg-asn-trp-val-pro-thr-ala-gln-leu-trp-gly-ala-val-gly-
PDBTitle: cytochrome bc1 bound to the inhibitor mjm170
39c5nmiX_



not modelled 5.6 46
PDB header:membrane protein
Chain: X: PDB Molecule:arg-asn-trp-val-pro-thr-ala-gln-leu-trp-gly-ala-val-gly-
PDBTitle: cytochrome bc1 bound to the inhibitor mjm170
40d1be3k_



not modelled 5.6 46
Fold:Single transmembrane helix
Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
41c2zxeG_



not modelled 5.4 24
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
42c6h3aB_



not modelled 5.3 32
PDB header:ligase
Chain: B: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: crystal structure of the kap1 rbcc domain in complex with the smarcad12 cue1 domain.
43c4kt3B_



not modelled 5.1 57
PDB header:hydrolase
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: structure of a type vi secretion system effector-immunity complex from2 pseudomonas protegens

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below