Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1567c_(-)_1774866_1775150
DateFri Aug 2 13:30:15 BST 2019
Unique Job ID2d3cda7de7b7ed2f
SequenceMVTMTSWPSR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.476 Y:30.180 Z:27.779
Model (left) based on template c5o6vC_
Top template information
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
Confidence and coverage
Confidence: 37.6% Coverage: 35%
33 residues ( 35% of your sequence) have been modelled with 37.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o6vC_



37.6 33
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
2c4b03A_



28.3 15
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
3c5n1qD_



27.8 52
PDB header:transferase
Chain: D: PDB Molecule:methyl-coenzyme m reductase iii from methanothermococcus
PDBTitle: methyl-coenzyme m reductase iii from methanothermococcus2 thermolithotrophicus at 1.9 a resolution
4d1v4sa2



26.1 60
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
5d1r3ba_



25.9 18
Fold:Bromodomain-like
Superfamily:Mob1/phocein
Family:Mob1/phocein
6d1bg3a4



24.3 64
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
7c3hm8D_



22.9 64
PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
8d1czan4



22.9 70
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
9c5wvxA_



22.3 29
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:trypsin/chymotrypsin inhibitor;
PDBTitle: crystal structure of bifunctional kunitz type trypsin /amylase2 inhibitor (amtin) from the tubers of alocasia macrorrhiza
10c5yf4A_



22.2 29
PDB header:protein binding
Chain: A: PDB Molecule:mob-like protein phocein;
PDBTitle: a kinase complex mst4-mob4
11d1pi1a_



22.0 24
Fold:Bromodomain-like
Superfamily:Mob1/phocein
Family:Mob1/phocein
12c2hjnA_



21.7 29
PDB header:cell cycle
Chain: A: PDB Molecule:maintenance of ploidy protein mob1;
PDBTitle: structural and functional analysis of saccharomyces2 cerevisiae mob1
13c2kxaA_



21.6 42
PDB header:viral protein, immune system
Chain: A: PDB Molecule:haemagglutinin ha2 chain peptide;
PDBTitle: the hemagglutinin fusion peptide (h1 subtype) at ph 7.4
14d1bg3a2



21.6 70
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
15d1czan2



21.3 47
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
16c6el1F_



20.7 21
PDB header:membrane protein
Chain: F: PDB Molecule:yaxa;
PDBTitle: yaxab pore complex
17c1v4sA_



20.0 55
PDB header:transferase
Chain: A: PDB Molecule:glucokinase isoform 2;
PDBTitle: crystal structure of human glucokinase
18d1ig8a2



19.1 45
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
19c2k27A_



17.0 36
PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
20c5zqtA_



16.9 55
PDB header:transferase
Chain: A: PDB Molecule:hexokinase-6;
PDBTitle: crystal structure of oryza sativa hexokinase 6
21c2lbgA_



not modelled 16.7 45
PDB header:membrane protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: structure of the chr of the prion protein in dpc micelles
22d1k78a2



not modelled 15.3 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
23c1ciiA_



not modelled 15.0 10
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
24c5wsnC_



not modelled 15.0 22
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
25c1ig8A_



not modelled 14.5 45
PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
26d1i8ya_



not modelled 14.3 44
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
27c1i8yA_



not modelled 14.3 44
PDB header:cytokine
Chain: A: PDB Molecule:granulin-1;
PDBTitle: semi-automatic structure determination of the cg1 3-302 peptide based on aria
28d1bdga2



not modelled 14.3 56
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
29d6paxa2



not modelled 14.3 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
30c4ii0A_



not modelled 14.3 38
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:cratabl;
PDBTitle: crystal structure of cratabl, a trypsin inhibitor from crataeva tapia
31c2w8mB_



not modelled 14.0 63
PDB header:hydrolase
Chain: B: PDB Molecule:orf d212;
PDBTitle: structure of d212, a nuclease from a fusselovirus.
32c4qs9A_



not modelled 13.8 55
PDB header:transferase
Chain: A: PDB Molecule:hexokinase-1;
PDBTitle: arabidopsis hexokinase 1 (athxk1) mutant s177a structure in glucose-2 bound form
33d3bx1c1



not modelled 13.7 17
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
34c6ijjK_



not modelled 13.3 14
PDB header:membrane protein
Chain: K: PDB Molecule:psak;
PDBTitle: photosystem i of chlamydomonas reinhardtii
35c1hkgA_



not modelled 13.0 6
PDB header:transferase
Chain: A: PDB Molecule:hexokinase a;
PDBTitle: structural dynamics of yeast hexokinase during catalysis
36c6c6lO_



not modelled 12.9 21
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
37c4nl6C_



not modelled 12.8 78
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
38c5dvhA_



not modelled 12.6 18
PDB header:protease inhibitor
Chain: A: PDB Molecule:pcpi-3;
PDBTitle: structure of the kunitz-type cysteine protease inhibitor pcpi-3 from2 potato
39c6nk6B_



not modelled 12.4 38
PDB header:virus like particle/signaling protein
Chain: B: PDB Molecule:e1 glycoprotein;
PDBTitle: electron cryo-microscopy of chikungunya vlp in complex with mouse2 mxra8 receptor
40c1r8oA_



not modelled 11.7 29
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:kunitz trypsin inhibitor;
PDBTitle: crystal structure of an unusual kunitz-type trypsin inhibitor from2 copaifera langsdorffii seeds
41d1tiea_



not modelled 11.6 30
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
42c5ireA_



not modelled 11.5 24
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
43d2i1sa1



not modelled 11.3 10
Fold:MM3350-like
Superfamily:MM3350-like
Family:MM3350-like
44c5dssB_



not modelled 11.2 29
PDB header:plant protein
Chain: B: PDB Molecule:mp-4;
PDBTitle: mp-4 contributes to snake venom neutralization by mucuna pruriens2 seeds through stimulation of cross-reactive antibodies
45c2xfcD_



not modelled 11.0 38
PDB header:virus
Chain: D: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the semliki forest virus cryo-em map
46d1avwb_



not modelled 10.9 15
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
47c2yewB_



not modelled 10.8 86
PDB header:virus
Chain: B: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins
48d1m3va1



not modelled 10.8 60
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
49c5hpzB_



not modelled 10.8 37
PDB header:chlorophyll binding protein
Chain: B: PDB Molecule:water-soluble chlorophyll protein;
PDBTitle: type ii water soluble chl binding proteins
50c3izxE_



not modelled 10.7 29
PDB header:virus
Chain: E: PDB Molecule:viral structural protein 5;
PDBTitle: 3.1 angstrom cryoem structure of cytoplasmic polyhedrosis virus
51d1wbaa_



not modelled 10.7 14
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
52d1xqoa_



not modelled 10.6 13
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:AgoG-like
53c3n42F_



not modelled 10.6 38
PDB header:viral protein
Chain: F: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: crystal structures of the mature envelope glycoprotein complex (furin2 cleavage) of chikungunya virus.
54c5yh4A_



not modelled 10.6 38
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:mirauclin-like protein;
PDBTitle: miraculin-like protein from vitis vinifera
55c2xfbF_



not modelled 10.6 38
PDB header:virus
Chain: F: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map
56c1ld4O_



not modelled 10.6 42
PDB header:virus
Chain: O: PDB Molecule:spike glycoprotein e1;
PDBTitle: placement of the structural proteins in sindbis virus
57d1hbna1



not modelled 10.5 44
Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
58c1z8yE_



not modelled 10.4 86
PDB header:virus
Chain: E: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
59c3tc2C_



not modelled 10.4 21
PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:kunitz-type proteinase inhibitor p1h5;
PDBTitle: crystal structure of potato serine protease inhibitor.
60d2alaa2



not modelled 10.2 38
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
61c3lw5K_



not modelled 10.2 27
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit x psak;
PDBTitle: improved model of plant photosystem i
62c6fgnA_



not modelled 10.1 35
PDB header:antitumor protein
Chain: A: PDB Molecule:histone acetyltransferase p300,tumor protein 63;
PDBTitle: solution structure of p300taz2-p63ta
63c1qhaA_



not modelled 9.5 70
PDB header:transferase
Chain: A: PDB Molecule:protein (hexokinase);
PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp
64c4j2yA_



not modelled 9.5 29
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:trypsin inhibitor;
PDBTitle: crystal structure of a plant trypsin inhibitor ecti in complex with2 bovine trypsin.
65c3j0fG_



not modelled 9.5 42
PDB header:virus
Chain: G: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: sindbis virion
66c3iirA_



not modelled 9.5 37
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:trypsin inhibitor;
PDBTitle: crystal structure of miraculin like protein from seeds of murraya2 koenigii
67c2qn4B_



not modelled 9.5 21
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:alpha-amylase/subtilisin inhibitor;
PDBTitle: structure and function study of rice bifunctional alpha-2 amylase/subtilisin inhibitor from oryza sativa
68c2q2kA_



not modelled 9.5 23
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
69c1bdgA_



not modelled 9.2 56
PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
70c2q2kB_



not modelled 9.1 23
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
71c1cirA_



not modelled 9.0 60
PDB header:serine protease inhibitor
Chain: A: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)]
72d1eyla_



not modelled 8.9 31
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
73d1s7ba_



not modelled 8.9 23
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
74c1hbuD_



not modelled 8.9 41
PDB header:methanogenesis
Chain: D: PDB Molecule:methyl-coenzyme m reductase i alpha subunit;
PDBTitle: methyl-coenzyme m reductase in the mcr-red1-silent state in complex2 with coenzyme m
75d1r8na_



not modelled 8.7 29
Fold:beta-Trefoil
Superfamily:STI-like
Family:Kunitz (STI) inhibitors
76c3s8jB_



not modelled 8.7 29
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:latex serine proteinase inhibitor;
PDBTitle: crystal structure of a papaya latex serine protease inhibitor (ppi) at2 2.6a resolution
77c2alaA_



not modelled 8.6 38
PDB header:viral protein
Chain: A: PDB Molecule:structural polyprotein (p130);
PDBTitle: crystal structure of the semliki forest virus envelope protein e1 in2 its monomeric conformation.
78d1p4ea2



not modelled 8.6 22
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
79c3d3sA_



not modelled 8.6 15
PDB header:transferase
Chain: A: PDB Molecule:l-2,4-diaminobutyric acid acetyltransferase;
PDBTitle: crystal structure of l-2,4-diaminobutyric acid acetyltransferase from2 bordetella parapertussis
80c4xb6D_



not modelled 8.6 39
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
81c1e6yA_



not modelled 8.5 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:methyl-coenzyme m reductase subunit alpha;
PDBTitle: methyl-coenzyme m reductase from methanosarcina barkeri
82c6gy6Q_



not modelled 8.4 21
PDB header:toxin
Chain: Q: PDB Molecule:xaxa;
PDBTitle: xaxab pore complex from xenorhabdus nematophila
83c6mx4J_



not modelled 8.3 38
PDB header:virus
Chain: J: PDB Molecule:e1;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus
84d1j2oa1



not modelled 8.3 60
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
85c3muwE_



not modelled 8.3 42
PDB header:virus
Chain: E: PDB Molecule:structural polyprotein;
PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus
86d1xg7a_



not modelled 8.0 21
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:AgoG-like
87c5hg1A_



not modelled 8.0 70
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:hexokinase-2;
PDBTitle: crystal structure of human hexokinase 2 with cmpd 1, a c-2-substituted2 glucosamine
88c6igzK_



not modelled 7.8 21
PDB header:plant protein
Chain: K: PDB Molecule:psak;
PDBTitle: structure of psi-lhci
89c3j0cG_



not modelled 7.6 42
PDB header:virus
Chain: G: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
90c1bctA_



not modelled 7.6 57
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of proteolytic fragment 163-2312 of bacterioopsin determined from nuclear magnetic3 resonance data in solution
91c3io2A_



not modelled 7.4 35
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase p300;
PDBTitle: crystal structure of the taz2 domain of p300
92c2dreA_



not modelled 7.2 17
PDB header:plant protein
Chain: A: PDB Molecule:water-soluble chlorophyll protein;
PDBTitle: crystal structure of water-soluble chlorophyll protein from2 lepidium virginicum at 2.00 angstrom resolution
93c2l3fA_



not modelled 7.2 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a putative uracil dna glycosylase from2 methanosarcina acetivorans, northeast structural genomics consortium3 target mvr76
94c2go2A_



not modelled 7.1 32
PDB header:protein binding
Chain: A: PDB Molecule:kunitz-type serine protease inhibitor bbki;
PDBTitle: crystal structure of bbki, a kunitz-type kallikrein inhibitor
95c2aj6A_



not modelled 7.0 24
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein mw0638;
PDBTitle: crystal structure of a putative gnat family acetyltransferase (mw0638)2 from staphylococcus aureus subsp. aureus at 1.63 a resolution
96c1p58C_



not modelled 6.8 27
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
97d1rutx1



not modelled 6.8 60
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
98c4e72A_



not modelled 6.7 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3298 family protein (pa4972) from2 pseudomonas aeruginosa pao1 at 2.15 a resolution
99c3iz3D_



not modelled 6.6 32
PDB header:virus
Chain: D: PDB Molecule:viral structural protein 5;
PDBTitle: cryoem structure of cytoplasmic polyhedrosis virus

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Transmembrane helix prediction 

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