Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1573_(-)_1779320_1779730
DateFri Aug 2 13:30:16 BST 2019
Unique Job ID0fb598a71c849dff
SequenceMTTTPARFNH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.196 Y:18.292 Z:33.143
Model (left) based on template d2az0a1
Top template information
Fold:ROP-like
Superfamily:FHV B2 protein-like
Family:FHV B2 protein-like
Confidence and coverage
Confidence: 25.6% Coverage: 18%
25 residues ( 18% of your sequence) have been modelled with 25.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2az0a1
25.6 44
Fold:ROP-like
Superfamily:FHV B2 protein-like
Family:FHV B2 protein-like
2c2mmpA_
22.2 32
PDB header:ribosomal protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a ribosomal protein
3d1yq2a4
21.7 24
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
4d1eexa_
21.3 73
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Diol dehydratase, alpha subunit
5d1iwpa_
20.6 73
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Diol dehydratase, alpha subunit
6c4gs1A_
20.1 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:dyp-type peroxidase;
PDBTitle: crystal structure of dyp-type peroxidase from thermobifida2 cellulosilytica
7c3bgaB_
18.5 33
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
8c3obaA_
15.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
9d1jz8a4
14.9 26
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
10c5doiF_
14.2 59
PDB header:dna binding protein
Chain: F: PDB Molecule:telomerase associated protein p45;
PDBTitle: crystal structure of tetrahymena p45n and p19
11c1yq2C_
13.8 22
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)
12c3fubA_
12.1 19
PDB header:hormone
Chain: A: PDB Molecule:gdnf family receptor alpha-1;
PDBTitle: crystal structure of gdnf-gfralpha1 complex
13c6etzA_
11.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb
14c2v5eA_
10.7 19
PDB header:receptor/glycoprotein complex
Chain: A: PDB Molecule:gdnf family receptor alpha-1;
PDBTitle: the structure of the gdnf:coreceptor complex: insights2 into ret signalling and heparin binding.
15c5u1sA_
10.1 39
PDB header:hydrolase
Chain: A: PDB Molecule:separin;
PDBTitle: crystal structure of the saccharomyces cerevisiae separase-securin2 complex at 3.0 angstrom resolution
16c3wknG_
7.7 63
PDB header:immune system
Chain: G: PDB Molecule:affinger p17;
PDBTitle: crystal structure of the artificial protein affinger p17 (af.p17)2 complexed with fc fragment of human igg
17c3gd9A_
7.5 44
PDB header:hydrolase
Chain: A: PDB Molecule:laminaripentaose-producing beta-1,3-guluase
PDBTitle: crystal structure of laminaripentaose-producing beta-1,3-2 glucanase in complex with laminaritetraose
18d2pnwa1
7.4 50
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
19c2kg4A_
7.0 17
PDB header:cell cycle
Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein gadd45
PDBTitle: three-dimensional structure of human gadd45alpha in solution by nmr
20c5h9xA_
6.8 67
PDB header:hydrolase
Chain: A: PDB Molecule:beta-1,3-glucanase;
PDBTitle: crystal structure of gh family 64 laminaripentaose-producing beta-1,3-2 glucanase from paenibacillus barengoltzii
21c5h4eA_
not modelled 6.6 56
PDB header:hydrolase
Chain: A: PDB Molecule:beta 1-3 glucanase;
PDBTitle: crystal structure of a beta-1,3-glucanase domain (gh64) from2 clostridium beijerinckii
22c2myxA_
not modelled 6.6 28
PDB header:ubiquitin-binding protein
Chain: A: PDB Molecule:coupling of ubiquitin conjugation to er degradation protein
PDBTitle: structure of the cue domain of yeast cue1
23c3m0zD_
not modelled 6.4 50
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
24c6c3aB_
not modelled 6.3 23
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: o2-, plp-dependent l-arginine hydroxylase rohp 4-hydroxy-2-2 ketoarginine complex
25c3s7xC_
not modelled 6.2 22
PDB header:viral protein
Chain: C: PDB Molecule:major capsid protein vp1;
PDBTitle: unassembled washington university polyomavirus vp1 pentamer r198k2 mutant
26c1zkaA_
not modelled 6.2 42
PDB header:transcription
Chain: A: PDB Molecule:transcription factor relb;
PDBTitle: nf-kb relb forms an intertwined homodimer, y300s mutant
27c5tdyC_
not modelled 6.0 41
PDB header:motor protein
Chain: C: PDB Molecule:flagellar m-ring protein;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
28d2g7oa1
not modelled 5.9 29
Fold:TraM-like
Superfamily:TraM-like
Family:TraM-like
29c6mn8A_
not modelled 5.7 23
PDB header:ligase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of prolyl-trna synthetase from onchocerca volvulus2 with bound halofuginone and nucleotide
30c3bn8A_
not modelled 5.6 22
PDB header:transport protein
Chain: A: PDB Molecule:putative sterol carrier protein 2;
PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution
31c2dhyA_
not modelled 5.4 19
PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
32d1g5ha1
not modelled 5.4 20
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
33d2g5da1
not modelled 5.4 28
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
34c2ejsA_
not modelled 5.4 28
PDB header:ligase
Chain: A: PDB Molecule:autocrine motility factor receptor, isoform 2;
PDBTitle: solution structure of ruh-076, a human cue domain
35c2ekfA_
not modelled 5.3 28
PDB header:ligase
Chain: A: PDB Molecule:ancient ubiquitous protein 1;
PDBTitle: solution structure of ruh-075, a human cue domain
36c6mr1A_
not modelled 5.2 63
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein;
PDBTitle: rbcs-like subdomain of ccmm
37c6k1hF_
not modelled 5.1 20
PDB header:protein transport
Chain: F: PDB Molecule:pts system mannose-specific eiid component;
PDBTitle: structure of membrane protein
38c2prxB_
not modelled 5.0 10
PDB header:hydrolase
Chain: B: PDB Molecule:thioesterase superfamily protein;
PDBTitle: crystal structure of thioesterase superfamily protein (zp_00837258.1)2 from shewanella loihica pv-4 at 1.65 a resolution

Binding site prediction 

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