Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1574_(-)_1779797_1780660
DateFri Aug 2 13:30:16 BST 2019
Unique Job IDe013c4017efca0bf
SequenceMGRKLSRRNK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.848 Y:33.778 Z:34.658
Model (left) based on template c2kxgA_
Top template information
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:aspartic protease inhibitor;
PDBTitle: the solution structure of the squash aspartic acid proteinase2 inhibitor (sqapi)
Confidence and coverage
Confidence: 31.2% Coverage: 13%
37 residues ( 13% of your sequence) have been modelled with 31.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Warning: 64% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kxgA_
31.2 41
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:aspartic protease inhibitor;
PDBTitle: the solution structure of the squash aspartic acid proteinase2 inhibitor (sqapi)
2c1psvA_
28.6 50
PDB header:designed peptide
Chain: A: PDB Molecule:pda8d;
PDBTitle: computationally designed peptide with a beta-beta-alpha2 fold selection, nmr, 32 structures
3c5xyiX_
26.0 23
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s23, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
4c2kqeA_
23.7 45
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: second pbz domain of human aplf protein in complex with2 ribofuranosyladenosine
5c1cffB_
23.2 36
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
6c2vbzA_
21.2 26
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
7c1g2hA_
20.3 24
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
8d1g2ha_
20.3 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
9c2zkrx_
20.3 73
PDB header:ribosomal protein/rna
Chain: X: PDB Molecule:rna helices;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
10c1ojlD_
20.1 37
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
11c2j376_
19.5 73
PDB header:ribosome
Chain: 6: PDB Molecule:ribosomal protein l31;
PDBTitle: model of mammalian srp bound to 80s rncs
12c2kqdA_
16.9 45
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: first pbz domain of human aplf protein in complex with2 ribofuranosyladenosine
13d2p7vb1
15.8 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
14c3jywW_
15.7 55
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l31(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
15d1ku3a_
13.8 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
16d1ntca_
13.3 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
17d1etxa_
12.4 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
18c5lnkt_
12.1 42
PDB header:oxidoreductase
Chain: T: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
19c2dbbA_
12.0 19
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
20c2cfxD_
11.5 19
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
21c5ldwn_
not modelled 11.3 42
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: structure of mammalian respiratory complex i, class1
22c5lc5n_
not modelled 11.3 42
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: structure of mammalian respiratory complex i, class2
23c5ldxn_
not modelled 11.3 42
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: structure of mammalian respiratory complex i, class3.
24c4ds7G_
not modelled 11.2 41
PDB header:protein binding
Chain: G: PDB Molecule:spindle pole body component 110;
PDBTitle: crystal structure of yeast calmodulin bound to the c-terminal fragment2 of spindle pole body protein spc110
25c5m7nA_
not modelled 11.2 14
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
26d1ttya_
not modelled 11.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
27d1fipa_
not modelled 10.7 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
28c4a1eW_
not modelled 10.2 45
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l31;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
29c4b6ad_
not modelled 10.1 55
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l5;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
30c2xzmL_
not modelled 10.0 27
PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s12;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
31d1nx4a_
not modelled 10.0 23
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:gamma-Butyrobetaine hydroxylase
32c6gcsR_
not modelled 9.7 42
PDB header:oxidoreductase
Chain: R: PDB Molecule:ni2m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
33c5fiyE_
not modelled 9.7 37
PDB header:apoptosis
Chain: E: PDB Molecule:prkc apoptosis wt1 regulator protein;
PDBTitle: crystal structure of coiled coil domain of pawr
34c3j21a_
not modelled 9.7 27
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
35c2e7xA_
not modelled 9.4 19
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
36c2k6rA_
not modelled 9.2 44
PDB header:de novo protein
Chain: A: PDB Molecule:full sequence design 1 synthetic superstable;
PDBTitle: protein folding on a highly rugged landscape: experimental observation2 of glassy dynamics and structural frustration
37c4l5eA_
not modelled 9.2 48
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
38c3zf7h_
not modelled 9.1 55
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
39c3u5gX_
not modelled 8.4 22
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s23-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
40d1r69a_
not modelled 8.3 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
41c2kuoA_
not modelled 8.3 45
PDB header:metal binding protein
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: structure and identification of adp-ribose recognition motifs of aplf2 and role in the dna damage response
42c1fsvA_
not modelled 8.1 44
PDB header:beta beta alpha motif
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, minimized average structure
43c1fsdA_
not modelled 8.1 44
PDB header:novel sequence
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, 41 structures
44c2fjrB_
not modelled 7.9 5
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
45c1s1iW_
not modelled 7.8 55
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l31;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
46c6fkgC_
not modelled 7.7 22
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
47c2kneB_
not modelled 7.6 50
PDB header:metal transport
Chain: B: PDB Molecule:atpase, ca++ transporting, plasma membrane 4;
PDBTitle: calmodulin wraps around its binding domain in the plasma2 membrane ca2+ pump anchored by a novel 18-1 motif
48c3izrg_
not modelled 7.6 73
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
49d1vqox1
not modelled 7.5 27
Fold:Ribosomal protein L31e
Superfamily:Ribosomal protein L31e
Family:Ribosomal protein L31e
50c3qp5C_
not modelled 7.4 27
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
51c2l4aA_
not modelled 7.4 22
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
52d1trra_
not modelled 7.3 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Trp repressor, TrpR
53d1ku7a_
not modelled 7.2 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
54c6ah3B_
not modelled 7.1 34
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop1;
PDBTitle: cryo-em structure of yeast ribonuclease p with pre-trna substrate
55c6ahrB_
not modelled 7.0 41
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop1;
PDBTitle: cryo-em structure of human ribonuclease p
56c3j3bd_
not modelled 7.0 73
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l5;
PDBTitle: structure of the human 60s ribosomal proteins
57c3t0yA_
not modelled 6.8 29
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
58c2r0qF_
not modelled 6.8 21
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
59c1wqkA_
not modelled 6.7 80
PDB header:toxin
Chain: A: PDB Molecule:toxin apetx1;
PDBTitle: solution structure of apetx1, a specific peptide inhibitor2 of human ether-a-go-go-related gene potassium channels3 from the venom of the sea anemone anthopleura4 elegantissima: a new fold for an herg toxin
60c3t72o_
not modelled 6.3 17
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
61d1jlxa2
not modelled 6.3 43
Fold:beta-Trefoil
Superfamily:Agglutinin
Family:Agglutinin
62c2e1cA_
not modelled 6.1 15
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
63d1zrua1
not modelled 6.0 70
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
64c2n64B_
not modelled 5.7 38
PDB header:signaling protein
Chain: B: PDB Molecule:sh3 domain-containing kinase-binding protein 1;
PDBTitle: nmr structure of the c-terminal coiled-coil domain of cin85
65c2cmyB_
not modelled 5.6 69
PDB header:hydrolase
Chain: B: PDB Molecule:veronica hederifolia trypsin inhibitor;
PDBTitle: crystal complex between bovine trypsin and veronica2 hederifolia trypsin inhibitor
66d2cmyb1
not modelled 5.6 69
Fold:Toxic hairpin
Superfamily:VhTI-like
Family:VhTI-like
67c4tvxT_
not modelled 5.6 33
PDB header:
PDB COMPND:
68c3ieiD_
not modelled 5.5 35
PDB header:transferase
Chain: D: PDB Molecule:leucine carboxyl methyltransferase 1;
PDBTitle: crystal structure of human leucine carboxylmethyltransferase-1 in2 complex with s-adenosyl homocysteine
69c2ln3A_
not modelled 5.5 59
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or135;
PDBTitle: solution nmr structure of de novo designed protein, if3-like fold,2 northeast structural genomics consortium target or135 (casd target)
70c3da0C_
not modelled 5.4 70
PDB header:viral protein
Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from
PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2
71c2lsqA_
not modelled 5.3 64
PDB header:immune system
Chain: A: PDB Molecule:analog of the fragment 197-221 of beta-1 adrenoreceptor;
PDBTitle: analog of the fragment 197-221 of beta-1 adrenoreceptor
72c3d8mA_
not modelled 5.3 70
PDB header:virus/viral protein
Chain: A: PDB Molecule:baseplate protein, receptor binding protein;
PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2
73c2zwaA_
not modelled 5.3 35
PDB header:transferase
Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2;
PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4
74c3e7lD_
not modelled 5.2 22
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
75c2gqqB_
not modelled 5.1 22
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
76d2cg4a1
not modelled 5.1 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain

Binding site prediction 

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