Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1576c_(-)_1780650_1782071
DateFri Aug 2 13:30:16 BST 2019
Unique Job ID255bf0a26398771e
SequenceMTEFDDIKNL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.490 Y:70.146 Z:96.955
Model (left) based on template c5tjtA_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: t5 bacteriophage major capsid protein - one pb8 hexon
Confidence and coverage
Confidence:100.0% Coverage: 58%
275 residues ( 58% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5tjtA_



100.0 17
PDB header:viral protein
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: t5 bacteriophage major capsid protein - one pb8 hexon
2d2ft1a1



100.0 15
Fold:Major capsid protein gp5
Superfamily:Major capsid protein gp5
Family:Major capsid protein gp5
3c3jb5C_



100.0 13
PDB header:virus
Chain: C: PDB Molecule:major capsid protein;
PDBTitle: capsid structure of the propionibacterium acnes bacteriophage2 atcc_clear
4c6b0xG_



100.0 14
PDB header:virus
Chain: G: PDB Molecule:major head protein;
PDBTitle: capsid protein and c-terminal part of scaffolding protein in the2 staphylococcus aureus phage 80alpha procapsid
5c1if0A_



100.0 14
PDB header:virus
Chain: A: PDB Molecule:protein (major capsid protein gp5);
PDBTitle: pseudo-atomic model of bacteriophage hk97 procapsid2 (prohead ii)
6c3p8qF_



100.0 15
PDB header:virus
Chain: F: PDB Molecule:gp5, head protein;
PDBTitle: hk97 prohead i encapsidating inactive virally encoded protease
7c3j1aE_



99.5 24
PDB header:virus
Chain: E: PDB Molecule:capsid protein;
PDBTitle: hk97-like fold fitted into 3d reconstruction of bacteriophage cw02
8c3j4uA_



98.7 18
PDB header:virus
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: a new topology of the hk97-like fold revealed in bordetella2 bacteriophage: non-covalent chainmail secured by jellyrolls
9c3j7wF_



98.4 14
PDB header:virus
Chain: F: PDB Molecule:major capsid protein 10a;
PDBTitle: capsid expansion mechanism of bacteriophage t7 revealed by multi-state2 atomic models derived from cryo-em reconstructions
10c4bmlA_



98.2 12
PDB header:virus
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: c-alpha backbone trace of major capsid protein gp39 found in marine2 virus syn5.
11c2e0zA_



98.1 10
PDB header:virus like particle
Chain: A: PDB Molecule:virus-like particle;
PDBTitle: crystal structure of virus-like particle from pyrococcus2 furiosus
12c4pt2B_



98.1 10
PDB header:virus like particle
Chain: B: PDB Molecule:encapsulin protein;
PDBTitle: myxococcus xanthus encapsulin protein (enca)
13c3dktD_



97.9 12
PDB header:structural protein/virus like particle
Chain: D: PDB Molecule:maritimacin;
PDBTitle: crystal structure of thermotoga maritima encapsulin
14c3c5bF_



97.7 16
PDB header:virus
Chain: F: PDB Molecule:putative uncharacterized protein;
PDBTitle: de novo model of bacteriophage epsilon 15 major capsid protein gp7
15c4an5F_



97.2 12
PDB header:virus
Chain: F: PDB Molecule:coat protein;
PDBTitle: capsid structure and its stability at the late stages of bacteriophage2 spp1 assembly
16c2xd8F_



95.1 13
PDB header:virus
Chain: F: PDB Molecule:t7-like capsid protein;
PDBTitle: capsid structure of the infectious prochlorococcus cyanophage p-ssp7
17c1yueA_



91.7 13
PDB header:viral protein
Chain: A: PDB Molecule:head vertex protein gp24;
PDBTitle: bacteriophage t4 capsid vertex protein gp24
18c5vf3H_



87.7 20
PDB header:virus
Chain: H: PDB Molecule:major capsid protein;
PDBTitle: bacteriophage t4 isometric capsid
19c1j1eB_



60.6 20
PDB header:contractile protein
Chain: B: PDB Molecule:troponin t;
PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form
20c1j1dF_



37.5 17
PDB header:contractile protein
Chain: F: PDB Molecule:troponin i;
PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form
21c5liiP_



not modelled 34.2 12
PDB header:virus like particle
Chain: P: PDB Molecule:major capsid protein;
PDBTitle: bacteriophage phi812k1-420 major capsid protein
22c5eonA_



not modelled 28.6 18
PDB header:de novo protein
Chain: A: PDB Molecule:acc-hex;
PDBTitle: crystal structure of a de novo antiparallel coiled-coil hexamer - acc-2 hex
23c5eonB_



not modelled 28.6 18
PDB header:de novo protein
Chain: B: PDB Molecule:acc-hex;
PDBTitle: crystal structure of a de novo antiparallel coiled-coil hexamer - acc-2 hex
24c5eonC_



not modelled 28.6 18
PDB header:de novo protein
Chain: C: PDB Molecule:acc-hex;
PDBTitle: crystal structure of a de novo antiparallel coiled-coil hexamer - acc-2 hex
25c1yv0T_



not modelled 28.0 21
PDB header:contractile protein
Chain: T: PDB Molecule:troponin t, fast skeletal muscle isoforms;
PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-free state
26c1j1eF_



not modelled 23.0 17
PDB header:contractile protein
Chain: F: PDB Molecule:troponin i;
PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form
27c5l35D_



not modelled 17.6 10
PDB header:virus
Chain: D: PDB Molecule:gene 5 protein;
PDBTitle: cryo-em structure of bacteriophage sf6 at 2.9 angstrom resolution
28c1j1eC_



not modelled 16.7 17
PDB header:contractile protein
Chain: C: PDB Molecule:troponin i;
PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form
29d1vqov1



not modelled 16.2 14
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
30c3izgG_



not modelled 15.9 19
PDB header:virus
Chain: G: PDB Molecule:major capsid protein 10a;
PDBTitle: bacteriophage t7 prohead shell em-derived atomic model
31d1jeia_



not modelled 12.1 22
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
32c4l6rA_



not modelled 11.8 15
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562 and glucagon receptor chimera;
PDBTitle: structure of the class b human glucagon g protein coupled receptor
33c3uotB_



not modelled 11.7 8
PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus
34c3d55A_



not modelled 9.8 27
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
35c4bjsC_



not modelled 9.7 35
PDB header:cell cycle
Chain: C: PDB Molecule:telomere length regulator protein rif1;
PDBTitle: crystal structure of the rif1 c-terminal domain (rif1-ctd)2 from saccharomyces cerevisiae
36d1s35a1



not modelled 9.3 13
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
37c3jcuw_



not modelled 9.1 33
PDB header:membrane protein
Chain: W: PDB Molecule:photosystem ii reaction center w protein, chloroplastic;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
38c3bqwA_



not modelled 8.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative capsid protein of prophage;
PDBTitle: crystal structure of the putative capsid protein of prophage (e.coli2 cft073)
39d2hgq11



not modelled 8.0 14
Fold:Long alpha-hairpin
Superfamily:Ribosomal protein L29 (L29p)
Family:Ribosomal protein L29 (L29p)
40c2myvA_



not modelled 7.8 6
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of m. oryzae protein avr1-co39
41c2krxA_



not modelled 7.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
42c3jtzA_



not modelled 7.6 29
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: structure of the arm-type binding domain of hpi integrase
43c1ytzI_



not modelled 7.1 16
PDB header:contractile protein
Chain: I: PDB Molecule:troponin i;
PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state
44d1tdha3



not modelled 7.0 13
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
45d1gjja2



not modelled 6.8 18
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
46d2ho2a1



not modelled 6.6 8
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
47d1dd3a1



not modelled 6.4 21
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
48d2vo1a1



not modelled 6.3 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
49c3bboZ_



not modelled 6.2 14
PDB header:ribosome
Chain: Z: PDB Molecule:ribosomal protein l29;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
50c3m8jA_



not modelled 5.8 8
PDB header:transcription
Chain: A: PDB Molecule:focb protein;
PDBTitle: crystal structure of e.coli focb at 1.4 a resolution
51c5mlcZ_



not modelled 5.6 14
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l29, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
52c6cc4A_



not modelled 5.6 8
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
53d1h9fa_



not modelled 5.5 14
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
54c5cwtC_



not modelled 5.5 24
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup57;
PDBTitle: crystal structure of chaetomium thermophilum nup57

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