Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1578c_(-)_1782765_1783235
DateFri Aug 2 13:30:16 BST 2019
Unique Job ID6f5569e887584dba
SequenceMPRPPKPARL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.426 Y:30.778 Z:31.361
Model (left) based on template c2o35A_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
Confidence and coverage
Confidence: 83.4% Coverage: 28%
44 residues ( 28% of your sequence) have been modelled with 83.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2o35A_



83.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
2d2o35a1



83.4 20
Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
3c3fybA_



83.0 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
4c5d6aA_



44.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase of the abc class;
PDBTitle: 2.7 angstrom crystal structure of abc transporter atpase from vibrio2 vulnificus in complex with adenylyl-imidodiphosphate (amp-pnp)
5c3neuA_



33.5 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
6c4o2xA_



33.0 21
PDB header:transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, atp-dependent clp
PDBTitle: structure of a malarial protein
7c4xjnM_



25.2 39
PDB header:viral protein/rna
Chain: M: PDB Molecule:nucleocapsid;
PDBTitle: structure of the parainfluenza virus 5 nucleocapsid-rna complex: an2 insight into paramyxovirus polymerase activity
8c2k29A_



24.0 15
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
9c2gf5A_



23.9 12
PDB header:apoptosis
Chain: A: PDB Molecule:fadd protein;
PDBTitle: structure of intact fadd (mort1)
10d1z0xa2



23.5 21
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
11c4yiyA_



22.5 8
PDB header:rna binding protein
Chain: A: PDB Molecule:krna editing a6 specific protein;
PDBTitle: structure of mrb1590 bound to amp-pnp
12c4fxeB_



19.3 15
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
13c5kkoD_



18.9 28
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterised protein;
PDBTitle: a 1.55a x-ray structure from vibrio cholerae o1 biovar el tor of a2 hypothetical protein
14c4r1hA_



16.4 13
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0741 protein;
PDBTitle: gntr family transcriptional regulator from listeria monocytogenes
15c2vcbA_



16.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase;
PDBTitle: family 89 glycoside hydrolase from clostridium perfringens2 in complex with pugnac
16c4xwhA_



15.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase;
PDBTitle: crystal structure of the human n-acetyl-alpha-glucosaminidase
17d2hs5a1



14.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
18c5e4vA_



13.9 29
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein,phosphoprotein;
PDBTitle: crystal structure of measles n0-p complex
19d1chka_



12.2 16
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Chitosanase
20d16vpa_



12.1 20
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
21d2a1jb1



not modelled 11.1 18
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
22c3zplE_



not modelled 10.9 22
PDB header:transcription/dna
Chain: E: PDB Molecule:putative marr-family transcriptional repressor;
PDBTitle: crystal structure of sco3205, a marr family transcriptional regulator2 from streptomyces coelicolor, in complex with dna
23c2jrbA_



not modelled 10.6 28
PDB header:rna binding protein
Chain: A: PDB Molecule:orf 1 protein;
PDBTitle: c-terminal domain of orf1p from mouse line-1
24c2rkkA_



not modelled 10.0 11
PDB header:lipid transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1;
PDBTitle: crystal structure of s.cerevisiae vta1 n-terminal domain
25c2x2iB_



not modelled 9.6 25
PDB header:lyase
Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1;
PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-1,4-2 glucan lyase with acarbose
26d1w7pd1



not modelled 9.6 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
27c2kngA_



not modelled 9.4 13
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
28d2fqma1



not modelled 9.2 18
Fold:Phosphoprotein oligomerization domain-like
Superfamily:Phosphoprotein oligomerization domain-like
Family:Phosphoprotein oligomerization domain-like
29c2marA_



not modelled 9.1 16
PDB header:unknown function
Chain: A: PDB Molecule:sxp/ral-2 family protein;
PDBTitle: solution structure of ani s 5 anisakis simplex allergen
30c4q2uM_



not modelled 8.7 21
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
31c1xi4D_



not modelled 8.6 22
PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:clathrin heavy chain;
PDBTitle: clathrin d6 coat
32c2cazB_



not modelled 7.9 11
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vps28;
PDBTitle: escrt-i core
33d2cazb1



not modelled 7.9 11
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
34c3by6C_



not modelled 7.8 16
PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
35d2e9xb1



not modelled 7.7 50
Fold:GINS helical bundle-like
Superfamily:GINS helical bundle-like
Family:PSF2 C-terminal domain-like
36c3enoC_



not modelled 7.2 19
PDB header:hydrolase/unknown function
Chain: C: PDB Molecule:uncharacterized protein pf2011;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
37d1eija_



not modelled 6.9 70
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
38c5kvrA_



not modelled 6.7 24
PDB header:translation
Chain: A: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: x-ray crystal structure of a fragment (1-75) of a transcriptional2 regulator pdhr from escherichia coli cft073
39d3bwga1



not modelled 6.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
40d1biaa1



not modelled 6.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
41c5oeiA_



not modelled 6.4 11
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein family upf0065:tat pathway signal;
PDBTitle: r. palustris rpa4515 with oxoadipate
42c6jx3B_



not modelled 6.4 13
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
43c2fh0A_



not modelled 6.3 50
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12
PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region
44d1iq0a1



not modelled 6.2 15
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
45d1zj8a1



not modelled 6.1 9
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
46d2f6mb1



not modelled 6.0 13
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
47c2du9A_



not modelled 5.9 16
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
48c4p96B_



not modelled 5.9 15
PDB header:transcription
Chain: B: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from vibrio cholerae
49c2g3nA_



not modelled 5.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside
50c3ic7A_



not modelled 5.7 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron
51c3we3B_



not modelled 5.6 16
PDB header:dna binding protein
Chain: B: PDB Molecule:bloom syndrome protein;
PDBTitle: structure of blm rqc domain bound to an arsenate ion
52d1efea_



not modelled 5.5 30
Fold:Insulin-like
Superfamily:Insulin-like
Family:Insulin-like
53d1p4wa_



not modelled 5.4 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
54d1fjlb_



not modelled 5.2 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain

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