Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1579c_(-)_1783316_1783630
DateFri Aug 2 13:30:17 BST 2019
Unique Job IDea01d8b1b2c38ef8
SequenceVTPINRPLTN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.508 Y:15.956 Z:19.260
Model (left) based on template c1tr8A_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:conserved protein (mth177);
PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
Confidence and coverage
Confidence: 92.2% Coverage: 19%
20 residues ( 19% of your sequence) have been modelled with 92.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1tr8A_



92.2 40
PDB header:chaperone
Chain: A: PDB Molecule:conserved protein (mth177);
PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
2c6riqP_



73.5 31
PDB header:protein fibril
Chain: P: PDB Molecule:minc;
PDBTitle: mincd filament from pseudomonas aeruginosa
3c4v02C_



70.8 31
PDB header:cell cycle
Chain: C: PDB Molecule:probable septum site-determining protein minc;
PDBTitle: minc:mind cell division protein complex, aquifex aeolicus
4c5xdmA_



64.4 29
PDB header:cell cycle
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: structure of the c-terminal domain of e. coli minc at 3.0 angstrom2 resolution
5d1hf2a1



64.3 26
Fold:Single-stranded right-handed beta-helix
Superfamily:Cell-division inhibitor MinC, C-terminal domain
Family:Cell-division inhibitor MinC, C-terminal domain
6c5fjaQ_



59.9 69
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
7c6cnbQ_



56.6 69
PDB header:transcription/dna
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7,dna-directed
PDBTitle: yeast rna polymerase iii initial transcribing complex
8c6cncQ_



56.6 69
PDB header:transcription/dna
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7,dna-directed
PDBTitle: yeast rna polymerase iii open complex
9c6cndQ_



56.4 69
PDB header:transcription/dna
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7,dna-directed
PDBTitle: yeast rna polymerase iii natural open complex (noc)
10c6cnfQ_



56.4 69
PDB header:transcription/dna
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7,dna-directed
PDBTitle: yeast rna polymerase iii elongation complex
11c5fj8Q_



55.5 69
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: cryo-em structure of yeast rna polymerase iii elongation complex at 3.2 9 a
12c1hf2A_



53.1 26
PDB header:cell division protein
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: crystal structure of the bacterial cell-division inhibitor minc from2 t. maritima
13c5fj9Q_



52.6 69
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a
14d1v92a_



44.9 32
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
15d1ou8a_



43.8 29
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
16d1k78a1



41.7 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
17d1msza_



41.4 36
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
18c1mszA_



41.4 36
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: solution structure of the r3h domain from human smubp-2
19c3akgA_



37.4 30
PDB header:hydrolase
Chain: A: PDB Molecule:putative secreted alpha l-arabinofuranosidase ii;
PDBTitle: crystal structure of exo-1,5-alpha-l-arabinofuranosidase complexed2 with alpha-1,5-l-arabinofuranobiose
20c2dzlA_



30.0 42
PDB header:structural genomics unknown function
Chain: A: PDB Molecule:protein fam100b;
PDBTitle: solution structure of the uba domain in human protein2 fam100b
21c5zjlA_



not modelled 29.1 58
PDB header:allergen
Chain: A: PDB Molecule:der f 23 allergen;
PDBTitle: crystal structure of the dust mite allergen der f 23 from2 dermatophagoides farinae
22d1pdnc_



not modelled 28.8 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
23d1ou9a_



not modelled 26.5 29
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
24d1yfna1



not modelled 25.3 24
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
25c6paxA_



not modelled 24.1 26
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
26d2csba1



not modelled 24.0 64
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
27d1gg4a4



not modelled 20.8 19
Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
28d2euca1



not modelled 20.6 31
Fold:YfmB-like
Superfamily:YfmB-like
Family:YfmB-like
29d1zszc1



not modelled 20.1 26
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
30d6paxa1



not modelled 18.3 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
31c5gkeB_



not modelled 17.8 19
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
32c2cpmA_



not modelled 17.3 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sperm-associated antigen 7;
PDBTitle: solution structure of the r3h domain of human sperm-2 associated antigen 7
33d1ko7a1



not modelled 16.5 18
Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:HPr kinase/phoshatase HprK N-terminal domain
34c3csqC_



not modelled 15.9 22
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
35c5ho0A_



not modelled 15.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular arabinanase;
PDBTitle: crystal structure of abna (closed conformation), a gh43 extracellular2 arabinanase from geobacillus stearothermophilus
36d2hyec3



not modelled 14.3 15
Fold:Cullin homology domain
Superfamily:Cullin homology domain
Family:Cullin homology domain
37c5u0pT_



not modelled 14.2 34
PDB header:transcription
Chain: T: PDB Molecule:mediator complex subunit 20;
PDBTitle: cryo-em structure of the transcriptional mediator
38d1omza_



not modelled 13.6 7
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Exostosin
39c3ixtC_



not modelled 13.5 60
PDB header:immune system
Chain: C: PDB Molecule:fusion glycoprotein f1;
PDBTitle: crystal structure of motavizumab fab bound to peptide epitope
40c3ixtP_



not modelled 13.5 60
PDB header:immune system
Chain: P: PDB Molecule:fusion glycoprotein f1;
PDBTitle: crystal structure of motavizumab fab bound to peptide epitope
41c3kstA_



not modelled 12.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: crystal structure of endo-1,4-beta-xylanase (np_811807.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution
42d1tiha_



not modelled 12.0 33
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
43c1u78A_



not modelled 11.2 16
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
44c1omxB_



not modelled 11.2 6
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-acetylhexosaminyltransferase2 (extl2)
45d1pjua2



not modelled 11.1 33
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
46c2opwA_



not modelled 10.9 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:phyhd1 protein;
PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo)
47d1whra_



not modelled 10.6 36
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
48c1fvyA_



not modelled 10.1 75
PDB header:hormone/growth factor
Chain: A: PDB Molecule:parathyroid hormone;
PDBTitle: solution structure of the osteogenic 1-31 fragment of the2 human parathyroid hormone
49c6eu1Q_



not modelled 10.1 50
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: rna polymerase iii - open dna complex (oc-pol3)
50c2k27A_



not modelled 9.8 28
PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
51c3bmzA_



not modelled 9.5 27
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: violacein biosynthetic enzyme vioe
52c3zljC_



not modelled 9.1 55
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of full-length e.coli dna mismatch repair protein2 muts d835r mutant in complex with gt mismatched dna
53c6cauA_



not modelled 9.0 29
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii2 ab5075-uw with amppnp
54d1ayaa_



not modelled 9.0 22
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
55c5xtaC_



not modelled 8.7 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:virk protein;
PDBTitle: crystal structure of lpg1832, a virk family protein from legionella2 pneumophila
56c2ge9A_



not modelled 8.4 26
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase btk;
PDBTitle: solution structures of the sh2 domain of bruton's tyrosine2 kinase
57c1wn4A_



not modelled 8.3 67
PDB header:plant protein
Chain: A: PDB Molecule:vontr protein;
PDBTitle: nmr structure of vontr
58c3zljD_



not modelled 8.2 55
PDB header:dna binding protein/dna
Chain: D: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of full-length e.coli dna mismatch repair protein2 muts d835r mutant in complex with gt mismatched dna
59c3tr7A_



not modelled 8.2 32
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii
60c3lv4B_



not modelled 8.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase yxia;
PDBTitle: crystal structure of the glycoside hydrolase, family 43 yxia protein2 from bacillus licheniformis. northeast structural genomics consortium3 target bir14.
61d1e8ca3



not modelled 7.9 6
Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
62d1moua_



not modelled 7.8 32
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
63d4sgbi_



not modelled 7.7 21
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
64c5erlD_



not modelled 7.7 36
PDB header:isomerase
Chain: D: PDB Molecule:snon,snon;
PDBTitle: crystal structure of the epimerase snon in complex with ni2+,2 succinate and nogalamycin ro
65c4ae4B_



not modelled 7.6 35
PDB header:protein transport
Chain: B: PDB Molecule:ubiquitin-associated protein 1;
PDBTitle: the ubap1 subunit of escrt-i interacts with ubiquitin via a novel2 souba domain
66d1s6la1



not modelled 7.5 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MerB N-terminal domain-like
67c1x6cA_



not modelled 7.4 23
PDB header:signaling protein
Chain: A: PDB Molecule:tyrosine-protein phosphatase, non-receptor type
PDBTitle: solution structures of the sh2 domain of human protein-2 tyrosine phosphatase shp-1
68c5gtuB_



not modelled 7.3 44
PDB header:hydrolase
Chain: B: PDB Molecule:tbc1 domain family member 5;
PDBTitle: structural and mechanistic insights into regulation of the retromer2 coat by tbc1d5
69c4zonB_



not modelled 7.3 31
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: B: PDB Molecule:verruculogen synthase;
PDBTitle: structure of ftmox1 with fumitremorgen b complex
70d1fyba1



not modelled 7.1 36
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
71d1z67a1



not modelled 7.0 16
Fold:YidB-like
Superfamily:YidB-like
Family:YidB-like
72d1ldja3



not modelled 6.9 24
Fold:Cullin homology domain
Superfamily:Cullin homology domain
Family:Cullin homology domain
73c5n6yD_



not modelled 6.8 26
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase vanadium-iron protein alpha chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
74d1t1ea2



not modelled 6.8 17
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
75c5ncrA_



not modelled 6.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine phosphatase;
PDBTitle: oh1 from the orf virus: a tyrosine phosphatase that displays distinct2 structural features and triple substrate specificity
76c5vvwA_



not modelled 6.6 29
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: structure of murc from pseudomonas aeruginosa
77c5m0tA_



not modelled 6.4 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-ketoglutarate-dependent non-heme iron oxygenase eash;
PDBTitle: alpha-ketoglutarate-dependent non-heme iron oxygenase eash
78c3eagA_



not modelled 6.3 29
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
79c1j6uA_



not modelled 6.3 29
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase murc (tm0231)2 from thermotoga maritima at 2.3 a resolution
80c2booA_



not modelled 6.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung) from2 deinococcus radiodurans.
81c2mtpB_



not modelled 6.2 46
PDB header:protein binding/cell adhesion
Chain: B: PDB Molecule:integrin alpha-iib;
PDBTitle: the structure of filamin repeat 21 bound to integrin
82d1oyvi_



not modelled 6.2 36
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
83d1i3za_



not modelled 6.1 16
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
84c2lseA_



not modelled 6.1 34
PDB header:de novo protein
Chain: A: PDB Molecule:four helix bundle protein;
PDBTitle: solution nmr structure of de novo designed four helix bundle protein,2 northeast structural genomics consortium (nesg) target or188
85c4xc9B_



not modelled 6.1 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidase/hydroxylase;
PDBTitle: crystal structure of apo hygx from streptomyces hygroscopicus
86c6reqB_



not modelled 6.1 19
PDB header:isomerase
Chain: B: PDB Molecule:protein (methylmalonyl-coa mutase);
PDBTitle: methylmalonyl-coa mutase, 3-carboxypropyl-coa inhibitor complex
87c2z5bB_



not modelled 5.9 56
PDB header:chaperone
Chain: B: PDB Molecule:uncharacterized protein ylr021w;
PDBTitle: crystal structure of a novel chaperone complex for yeast2 20s proteasome assembly
88c3m6zA_



not modelled 5.9 64
PDB header:isomerase
Chain: A: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of an n-terminal 44 kda fragment of topoisomerase v2 in the presence of guanidium hydrochloride
89c5ermA_



not modelled 5.8 24
PDB header:lyase
Chain: A: PDB Molecule:fusicoccadiene synthase;
PDBTitle: crystal structure of cyclization domain of phomopsis amygdali2 fusicoccadiene synthase complexed with magnesium ions and pamidronate
90d1gyxa_



not modelled 5.8 7
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
91c3mazA_



not modelled 5.8 38
PDB header:signaling protein
Chain: A: PDB Molecule:signal-transducing adaptor protein 1;
PDBTitle: crystal structure of the human brdg1/stap-1 sh2 domain in complex with2 the ntal ptyr136 peptide
92d1pjua1



not modelled 5.7 21
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
93c2ci8A_



not modelled 5.7 20
PDB header:translation
Chain: A: PDB Molecule:cytoplasmic protein nck1;
PDBTitle: sh2 domain of human nck1 adaptor protein - uncomplexed
94c4xbzB_



not modelled 5.6 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:evdo1;
PDBTitle: crystal structure of evdo1 from micromonospora carbonacea var.2 aurantiaca
95c1m8oA_



not modelled 5.6 46
PDB header:membrane protein
Chain: A: PDB Molecule:platelet integrin alfaiib subunit: cytoplasmic
PDBTitle: platelet integrin alfaiib-beta3 cytoplasmic domain
96c1s4wA_



not modelled 5.6 46
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: nmr structure of the cytoplasmic domain of integrin aiib in2 dpc micelles
97c1dpkA_



not modelled 5.6 46
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib subunit;
PDBTitle: solution structure of the cytoplasmic domain of the2 integrin alpha-iib subunit
98c4jlrS_



not modelled 5.6 60
PDB header:immune system
Chain: S: PDB Molecule:rsv_1isea designed scaffold;
PDBTitle: crystal structure of a designed respiratory syncytial virus immunogen2 in complex with motavizumab
99c5zm4B_



not modelled 5.5 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:dioxygenase anda;
PDBTitle: fe(ii)/(alpha)ketoglutarate-dependent dioxygenase anda with2 preandiloid c

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