Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1584c_(-)_1786314_1786535
DateFri Aug 2 13:30:17 BST 2019
Unique Job ID7e3fabce2271a99c
SequenceVSTIYHHRGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.277 Y:22.653 Z:24.929
Model (left) based on template c1gw4A_
Top template information
PDB header:high density lipoproteins
Chain: A: PDB Molecule:apoa-i;
PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure
Confidence and coverage
Confidence: 72.3% Coverage: 42%
31 residues ( 42% of your sequence) have been modelled with 72.3% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1gw4A_
72.3 55
PDB header:high density lipoproteins
Chain: A: PDB Molecule:apoa-i;
PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure
2d1u8va1
57.0 30
Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
3c4oo2D_
50.1 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:chlorophenol-4-monooxygenase;
PDBTitle: streptomyces globisporus c-1027 fad dependent (s)-3-chloro-β-2 tyrosine-s-sgcc2 c-5 hydroxylase sgcc apo form
4c3hwcD_
34.5 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:chlorophenol-4-monooxygenase component 2;
PDBTitle: crystal structure of chlorophenol 4-monooxygenase (tftd) of2 burkholderia cepacia ac1100
5c6eb0A_
33.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit;
PDBTitle: structure of 4-hydroxyphenylacetate 3-monooxygenase (hpab), oxygenase2 component from escherichia coli
6d1mtyb_
31.6 26
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
7d2q22a1
31.3 18
Fold:Ava3019-like
Superfamily:Ava3019-like
Family:Ava3019-like
8c1odrA_
30.3 40
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40
9c1odpA_
30.3 40
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
10c1odqA_
30.3 40
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
11c1u8vA_
26.1 32
PDB header:lyase, isomerase
Chain: A: PDB Molecule:gamma-aminobutyrate metabolism dehydratase/isomerase;
PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from clostridium2 aminobutyricum: radical catalysis involving a [4fe-4s] cluster and3 flavin
12c6ny5A_
25.3 14
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:pumilio domain-containing protein c56f2.08c;
PDBTitle: crystal structure of the pum-hd domain of s. pombe puf1 in complex2 with rna
13c4g5eD_
17.0 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:2,4,6-trichlorophenol 4-monooxygenase;
PDBTitle: 2,4,6-trichlorophenol 4-monooxygenase
14d1hj3a1
16.2 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
15d1rbli_
16.1 50
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
16c2kz5A_
14.7 53
PDB header:transcription
Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit;
PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b
17d1svdm1
14.5 33
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
18c2yyjA_
14.5 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylacetate-3-hydroxylase;
PDBTitle: crystal structure of the oxygenase component (hpab) of 4-2 hydroxyphenylacetate 3-monooxygenase complexed with fad and 4-3 hydroxyphenylacetate
19d2r40d1
14.3 47
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
20d2csua3
14.1 24
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
21d1wdds_
not modelled 13.7 45
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
22d1gk8i_
not modelled 13.6 40
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
23c5mz2I_
not modelled 12.9 42
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
24d1bwvs_
not modelled 12.4 58
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
25c3oeoD_
not modelled 12.0 36
PDB header:signaling protein
Chain: D: PDB Molecule:spheroplast protein y;
PDBTitle: the crystal structure e. coli spy
26c4a8xB_
not modelled 11.8 67
PDB header:transcription
Chain: B: PDB Molecule:hook-like, isoform a;
PDBTitle: structure of the core asap complex
27d1bxni_
not modelled 11.6 58
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
28c6fkfd_
not modelled 11.5 12
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit beta, chloroplastic;
PDBTitle: chloroplast f1fo conformation 1
29c2ybvN_
not modelled 11.2 50
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
30c5nv3P_
not modelled 11.0 50
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
31d3eaua1
not modelled 10.7 20
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
32d8ruci_
not modelled 10.7 45
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
33d1uzdc1
not modelled 10.5 40
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
34d2v6ai1
not modelled 10.4 40
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
35d1ej7s_
not modelled 10.2 40
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
36c2yclA_
not modelled 10.1 27
PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron-sulfur
PDBTitle: complete structure of the corrinoid,iron-sulfur protein including2 the n-terminal domain with a 4fe-4s cluster
37c3bt5A_
not modelled 10.1 32
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein duf305;
PDBTitle: crystal structure of duf305 fragment from deinococcus radiodurans
38d1ru0a_
not modelled 9.8 33
Fold:DCoH-like
Superfamily:PCD-like
Family:PCD-like
39d1gyxa_
not modelled 9.7 31
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
40c3lutA_
not modelled 9.6 20
PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2
41c6rdlP_
not modelled 9.3 31
PDB header:proton transport
Chain: P: PDB Molecule:mitochondrial atp synthase subunit oscp;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1b,2 monomer-masked refinement
42d1fi3a_
not modelled 8.8 35
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
43d1mhyb_
not modelled 8.8 29
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
44c3epvB_
not modelled 8.6 19
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr;
PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms
45c3m20A_
not modelled 8.6 27
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
46c4kmfA_
not modelled 8.5 27
PDB header:transferase/dna
Chain: A: PDB Molecule:interferon-inducible and double-stranded-dependent eif-
PDBTitle: crystal structure of zalpha domain from carassius auratus pkz in2 complex with z-dna
47c4lb6B_
not modelled 8.5 45
PDB header:transferase/dna
Chain: B: PDB Molecule:protein kinase containing z-dna binding domains;
PDBTitle: crystal structure of pkz zalpha in complex with ds(cg)6 (tetragonal2 form)
48d2apla1
not modelled 8.4 25
Fold:PG0816-like
Superfamily:PG0816-like
Family:PG0816-like
49c2lz1A_
not modelled 8.2 41
PDB header:transcription
Chain: A: PDB Molecule:nuclear factor erythroid 2-related factor 2;
PDBTitle: solution nmr structure of the dna-binding domain of human nf-e2-2 related factor 2, northeast structural genomics consortium (nesg)3 target hr3520o
50c6b8ho_
not modelled 8.2 31
PDB header:membrane protein
Chain: O: PDB Molecule:atp synthase subunit 5, mitochondrial;
PDBTitle: mosaic model of yeast mitochondrial atp synthase monomer
51c4uf6L_
not modelled 8.1 46
PDB header:hydrolase
Chain: L: PDB Molecule:nuclear factor related to kappa-b-binding protein;
PDBTitle: uch-l5 in complex with ubiquitin-propargyl bound to an activating2 fragment of ino80g
52c1q2iA_
not modelled 8.1 44
PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
53c5jffD_
not modelled 7.9 56
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict mutant g55r in complex with ecfica
54c4djeE_
not modelled 7.6 24
PDB header:transferase/vitamin-binding protein
Chain: E: PDB Molecule:corrinoid/iron-sulfur protein large subunit;
PDBTitle: crystal structure of folate-bound corrinoid iron-sulfur protein2 (cfesp) in complex with its methyltransferase (metr), co-crystallized3 with folate
55c4xdnA_
not modelled 7.6 47
PDB header:cell cycle
Chain: A: PDB Molecule:mau2 chromatid cohesion factor homolog;
PDBTitle: crystal structure of scc4 in complex with scc2n
56d2bgxa2
not modelled 7.5 17
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
57c4mqvD_
not modelled 7.4 55
PDB header:protein binding
Chain: D: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: crystal complex of rpa32c and smarcal1 n-terminus
58c4mqvB_
not modelled 7.4 55
PDB header:protein binding
Chain: B: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: crystal complex of rpa32c and smarcal1 n-terminus
59c5t4oL_
not modelled 7.2 19
PDB header:hydrolase
Chain: L: PDB Molecule:atp synthase subunit delta;
PDBTitle: autoinhibited e. coli atp synthase state 1
60d1tm9a_
not modelled 7.0 64
Fold:Hypothetical protein MG354
Superfamily:Hypothetical protein MG354
Family:Hypothetical protein MG354
61d1c75a_
not modelled 7.0 11
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
62d351ca_
not modelled 7.0 18
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
63c4u5pA_
not modelled 6.9 21
PDB header:isomerase
Chain: A: PDB Molecule:rhcc;
PDBTitle: crystal structure of native rhcc (yp_702633.1) from rhodococcus jostii2 rha1 at 1.78 angstrom
64c2lr4A_
not modelled 6.9 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:spbc2 prophage-derived uncharacterized protein yola;
PDBTitle: nmr structure of the protein np_390037.1 from bacillus subtilis
65c3nzzA_
not modelled 6.8 36
PDB header:cell invasion
Chain: A: PDB Molecule:cell invasion protein sipd;
PDBTitle: crystal structure of the salmonella type iii secretion system tip2 protein sipd
66c3qzcA_
not modelled 6.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:periplasmic protein cpxp;
PDBTitle: structure of the periplasmic stress response protein cpxp
67c3bdnB_
not modelled 6.4 36
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
68c3itfA_
not modelled 6.3 17
PDB header:signaling protein
Chain: A: PDB Molecule:periplasmic adaptor protein cpxp;
PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein
69c2qw6A_
not modelled 6.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:aaa atpase, central region;
PDBTitle: crystal structure of the c-terminal domain of an aaa atpase from2 enterococcus faecium do
70d2qw6a1
not modelled 6.2 25
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
71c5jfzF_
not modelled 5.9 57
PDB header:transferase
Chain: F: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g
72c5jfzB_
not modelled 5.9 57
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g
73c3c6vB_
not modelled 5.8 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130;
PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus
74c2l69A_
not modelled 5.8 50
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
75d1euva_
not modelled 5.7 19
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
76c4l8iA_
not modelled 5.7 19
PDB header:immune system
Chain: A: PDB Molecule:rsv epitope scaffold ffl_005;
PDBTitle: crystal structure of rsv epitope scaffold ffl_005
77d1k78a1
not modelled 5.6 54
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
78c2rrnA_
not modelled 5.5 53
PDB header:protein transport
Chain: A: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: solution structure of secdf periplasmic domain p4
79c4wlpB_
not modelled 5.5 46
PDB header:protein binding
Chain: B: PDB Molecule:nuclear factor related to kappa-b-binding protein;
PDBTitle: crystal structure of uch37-nfrkb inhibited deubiquitylating complex
80c4bolA_
not modelled 5.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:ampdh2;
PDBTitle: crystal structure of ampdh2 from pseudomonas aeruginosa in2 complex with pentapeptide
81d1ynra1
not modelled 5.4 29
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
82d1k0ia2
not modelled 5.4 50
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:PHBH-like
83c2yjfM_
not modelled 5.3 31
PDB header:motor protein
Chain: M: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: oligomeric assembly of actin bound to mrtf-a
84d1t2sa_
not modelled 5.3 16
Fold:SH3-like barrel
Superfamily:PAZ domain
Family:PAZ domain
85d1sknp_
not modelled 5.2 44
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
86c2kktA_
not modelled 5.2 75
PDB header:transcription
Chain: A: PDB Molecule:ataxin-7-like protein 3;
PDBTitle: solution structure of the sca7 domain of human ataxin-7-l3 protein
87c5u0pU_
not modelled 5.2 26
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
88c1yybA_
not modelled 5.1 75
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 5;
PDBTitle: solution structure of 1-26 fragment of human programmed2 cell death 5 protein
89c4clvB_
not modelled 5.1 19
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
90d2cqea1
not modelled 5.1 30
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
91c6h5lB_
not modelled 5.0 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:conserved hypothetical cytochrome protein;
PDBTitle: kuenenia stuttgartiensis reducing hao-like protein complex2 kustc0457/kustc0458
92c5lqzU_
not modelled 5.0 25
PDB header:hydrolase
Chain: U: PDB Molecule:atp synthase oscp subunit;
PDBTitle: structure of f-atpase from pichia angusta, state1

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